RNA–Protein interactions for RNA: ENST00000600055.1

LIG1-219, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 602 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-219ENST00000600055 ZNF230Q9UIE0 474 aaPredicted RBP12.18□□□□□ -0.46
LIG1-219ENST00000600055 IGHV1-3A0A0C4DH29 117 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 IGKV1-6A0A0C4DH72 117 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 GAPDHP04406 335 aaKnown RBP12.17□□□□□ -0.46
LIG1-219ENST00000600055 FCGR3AP08637 254 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 IL3RAP26951 378 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 KIR2DS4P43632 304 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 SERPINB10P48595 397 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 PROK1P58294 105 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 BLCAPP62952 87 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 MRPS15P82914 257 aaKnown RBP12.17□□□□□ -0.46
LIG1-219ENST00000600055 ARFRP1Q13795 201 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 HABP2Q14520 560 aaPredicted RBP12.17□□□□□ -0.46
LIG1-219ENST00000600055 OR8H3Q8N146 312 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 LYG1Q8N1E2 194 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 RTN4IP1Q8WWV3 396 aaPredicted RBP12.17□□□□□ -0.46
LIG1-219ENST00000600055 WFDC12Q8WWY7 111 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 BCL7BQ9BQE9 202 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 SLC25A33Q9BSK2 321 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 ABHD14AQ9BUJ0 271 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 ZNF702PQ9H963 129 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 NDUFA13Q9P0J0 144 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 SLC23A1Q9UHI7 598 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 TENM1Q9UKZ4 2725 aa12.17□□□□□ -0.46
LIG1-219ENST00000600055 SERPINE3A8MV23 424 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 TRDCB7Z8K6 153 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 RGS11O94810 467 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 HNF4GQ14541 408 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 GPR107Q5VW38 600 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 STEAP3Q658P3 488 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 THNSL2Q86YJ6 484 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 ANKRD13BQ86YJ7 626 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 ODF3L1Q8IXM7 274 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 IZUMO1Q8IYV9 350 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 RBM14Q96PK6 669 aaKnown RBP12.16□□□□□ -0.46
LIG1-219ENST00000600055 RANBP3Q9H6Z4 567 aaPredicted RBP12.16□□□□□ -0.46
LIG1-219ENST00000600055 MGAT4AQ9UM21 535 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 SPATA2Q9UM82 520 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 ETV7Q9Y603 341 aa12.16□□□□□ -0.46
LIG1-219ENST00000600055 TMEM235A6NFC5 223 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 SH2D7A6NKC9 451 aaPredicted RBP12.15□□□□□ -0.46
LIG1-219ENST00000600055 ZNF736B4DX44 427 aaPredicted RBP12.15□□□□□ -0.46
LIG1-219ENST00000600055 ST8SIA5O15466 376 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 OR2F2O95006 317 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 IGKV1D-33P01593 117 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 IGKV1-33P01594 117 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 GSTT2P0CG29 244 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 GSTT2BP0CG30 244 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 FAM106CPP0CH98 169 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 CEACAM6P40199 344 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 OR3A3P47888 321 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 ZNF137PP52743 207 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 TMBIM6P55061 237 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 SCAND1P57086 179 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 HES1Q14469 280 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 HERPUD1Q15011 391 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 ZNF260Q3ZCT1 412 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 LY6G6FQ5SQ64 297 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 SHISA2Q6UWI4 295 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 OR2AK2Q8NG84 335 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 IFI27L2Q9H2X8 130 aa12.15□□□□□ -0.46
LIG1-219ENST00000600055 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP12.15□□□□□ -0.46
LIG1-219ENST00000600055 TRAV18A0A075B6X5 111 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 IGKV1D-8A0A087WSZ0 117 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 FABP7O15540 132 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 HSPA12AO43301 675 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 LANCL1O43813 399 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 AMY1AP04745 511 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 AMY2AP04746 511 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 TMEM11P17152 192 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 ZBTB25P24278 435 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 TALDO1P37837 337 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 CTF1Q16619 201 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 IGSF11Q5DX21 431 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 HACD4Q5VWC8 232 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 C16orf82Q7Z2V1 217 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 TGIF2LXQ8IUE1 241 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 CROCCP3Q8IVE0 287 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 Q8N2B8 174 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 DTX3Q8N9I9 347 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 OR2T6Q8NHC8 308 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 RAB2BQ8WUD1 216 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 NUDCD2Q8WVJ2 157 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 SLC25A46Q96AG3 418 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 PRSS22Q9GZN4 317 aa12.14□□□□□ -0.47
LIG1-219ENST00000600055 SAA2-SAA4A0A096LPE2 208 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 BET1O15155 118 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 SSX5O60225 188 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 TMEM127O75204 238 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 SCGNO76038 276 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 GABARAPO95166 117 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 GSTP1P09211 210 aaKnown RBP12.13□□□□□ -0.47
LIG1-219ENST00000600055 SAA2P0DJI9 122 aaPredicted RBP12.13□□□□□ -0.47
LIG1-219ENST00000600055 ARL6IP1Q15041 203 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 TMEM95Q3KNT9 176 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 HIST2H2BDQ6DRA6 164 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 CLVS1Q8IUQ0 354 aaPredicted RBP12.13□□□□□ -0.47
LIG1-219ENST00000600055 OR4A4PQ8NGN8 299 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 ABHD14BQ96IU4 210 aa12.13□□□□□ -0.47
LIG1-219ENST00000600055 MRPL20Q9BYC9 149 aaKnown RBP12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms