RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 KIAA2026Q5HYC2 2103 aa9.95□□□□□ -0.82
UPF1-203ENST00000594504 BUB1B-PAK6H3BSN5 160 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 J3QR06 171 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 SCGNO76038 276 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 TFAP2AP05549 437 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 TGFBR1P36897 503 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 ALDH3B2P48448 385 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 ARL6IP1Q15041 203 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 MOGAT2Q3SYC2 334 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 ZNF880Q6PDB4 577 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 ANKRD13BQ86YJ7 626 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 PRR18Q8N4B5 295 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 C8orf31Q8N9H6 132 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 OR1L1Q8NH94 360 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 LEAP2Q969E1 77 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 CMSS1Q9BQ75 279 aaKnown RBP9.94□□□□□ -0.82
UPF1-203ENST00000594504 SLC25A33Q9BSK2 321 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 ATG5Q9H1Y0 275 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 ABRACLQ9P1F3 81 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 GNG12Q9UBI6 72 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 MGAT4AQ9UM21 535 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 NOTCH1P46531 2555 aa9.94□□□□□ -0.82
UPF1-203ENST00000594504 IGHV3-43A0A0B4J1X8 118 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 SERPINE3A8MV23 424 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 OOSP1A8MZH6 123 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 K7EIL1 84 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 MFNGO00587 321 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 GABARAPO95166 117 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 IGHV3-7P01780 117 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 AMY1AP04745 511 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 AMY2AP04746 511 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 IGHV3-43DP0DP04 118 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 PF4V1P10720 104 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 HIST1H1DP16402 221 aaKnown RBP9.93□□□□□ -0.82
UPF1-203ENST00000594504 RPS19P39019 145 aaKnown RBP9.93□□□□□ -0.82
UPF1-203ENST00000594504 GNG10P50151 68 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 ARHGDIBP52566 201 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 VBP1P61758 197 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 NCS1P62166 190 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 MRPS15P82914 257 aaKnown RBP9.93□□□□□ -0.82
UPF1-203ENST00000594504 HTD2P86397 168 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 HMGN3Q15651 99 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 C9orf152Q5JTZ5 239 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 TPTE2P1Q5T6R2 138 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 GPR141Q7Z602 305 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 LINC00311Q8N616 119 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 SETD6Q8TBK2 473 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 GALMQ96C23 342 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 RBM14Q96PK6 669 aaKnown RBP9.93□□□□□ -0.82
UPF1-203ENST00000594504 HDHD3Q9BSH5 251 aaPredicted RBP9.93□□□□□ -0.82
UPF1-203ENST00000594504 RHBDL2Q9NX52 303 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 JPT1Q9UK76 154 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 KCNK7Q9Y2U2 307 aa9.93□□□□□ -0.82
UPF1-203ENST00000594504 LY6LH3BQJ8 138 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 PF4P02776 101 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 CD3GP09693 182 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 GNB3P16520 340 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 BRS3P32247 399 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 SERPINB10P48595 397 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 KRTAP10-11P60412 298 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 MADCAM1Q13477 382 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 DEFB121Q5J5C9 76 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 GPR107Q5VW38 600 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 CCDC144NLQ6NUI1 221 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 OR10X1Q8NGY0 326 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 SLC25A46Q96AG3 418 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 RPEQ96AT9 228 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 Q9N2K0 584 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 OR2S2Q9NQN1 319 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.92□□□□□ -0.82
UPF1-203ENST00000594504 SPATA2Q9UM82 520 aa9.92□□□□□ -0.82
UPF1-203ENST00000594504 TSSC4Q9Y5U2 329 aaPredicted RBP9.92□□□□□ -0.82
UPF1-203ENST00000594504 A0A075B6Q4 140 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 WI2-2373I1.2A0A1W2PRP0 233 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 RGS11O94810 467 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 OR2F2O95006 317 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 IL3RAP26951 378 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 MNDAP41218 407 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 HLA-DRB3P79483 266 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 CTF1Q16619 201 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 KHDC1LQ5JSQ8 128 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 STEAP3Q658P3 488 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 SLC25A48Q6ZT89 311 aaKnown RBP9.91□□□□□ -0.82
UPF1-203ENST00000594504 C16orf82Q7Z2V1 217 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 ZNF439Q8NDP4 499 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 OR10V1Q8NGI7 309 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 OR5H6Q8NGV6 325 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 CAPSLQ8WWF8 208 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 TOMM40LQ969M1 308 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 KCTD12Q96CX2 325 aaKnown RBP9.91□□□□□ -0.82
UPF1-203ENST00000594504 SLC25A38Q96DW6 304 aa9.91□□□□□ -0.82
UPF1-203ENST00000594504 NAA50Q9GZZ1 169 aaKnown RBP9.91□□□□□ -0.82
UPF1-203ENST00000594504 A0A0A6YYH2 397 aa9.9□□□□□ -0.82
UPF1-203ENST00000594504 A0A1W2PPE3 182 aa9.9□□□□□ -0.82
UPF1-203ENST00000594504 A6NJ64 397 aa9.9□□□□□ -0.82
UPF1-203ENST00000594504 YPEL1O60688 119 aa9.9□□□□□ -0.82
UPF1-203ENST00000594504 FCGR3AP08637 254 aa9.9□□□□□ -0.82
UPF1-203ENST00000594504 GSTP1P09211 210 aaKnown RBP9.9□□□□□ -0.82
UPF1-203ENST00000594504 HOXD3P31249 432 aaPredicted RBP9.9□□□□□ -0.82
UPF1-203ENST00000594504 PPP1CCP36873 323 aaKnown RBP9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 40.7 ms