RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 FAM90A9PA6NNJ1 464 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 HAX1O00165 279 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 TIMM23O14925 209 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 SLC31A2O15432 143 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 HSPA12AO43301 675 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 GSTP1P09211 210 aaKnown RBP12.05□□□□□ -0.48
UPF1-202ENST00000594243 SCTP09683 121 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 PPP1CCP36873 323 aaKnown RBP12.05□□□□□ -0.48
UPF1-202ENST00000594243 SERPINB10P48595 397 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 ZNF137PP52743 207 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 PITPNAQ00169 270 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 GNMTQ14749 295 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 KIR2DS1Q14954 304 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 SRSF7Q16629 238 aaKnown RBP eCLIP12.05□□□□□ -0.48
UPF1-202ENST00000594243 MOB3BQ86TA1 216 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 ANKRD13BQ86YJ7 626 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 LYG1Q8N1E2 194 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 DRAM1Q8N682 238 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 OR2AK2Q8NG84 335 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 OR5H6Q8NGV6 325 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 OR2T6Q8NHC8 308 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 RTN4IP1Q8WWV3 396 aaPredicted RBP12.05□□□□□ -0.48
UPF1-202ENST00000594243 ST6GALNAC6Q969X2 333 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 RBM14Q96PK6 669 aaKnown RBP12.05□□□□□ -0.48
UPF1-202ENST00000594243 PRSS22Q9GZN4 317 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 GHITMQ9H3K2 345 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 DIABLOQ9NR28 239 aa12.05□□□□□ -0.48
UPF1-202ENST00000594243 A0A0A6YYH2 397 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 A6NJ64 397 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 ITGB1BP1O14713 200 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 OR2F2O95006 317 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 TFAP2AP05549 437 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 FCGR3AP08637 254 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 CEACAM6P40199 344 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 REG1BP48304 166 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 VBP1P61758 197 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 NCS1P62166 190 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 HES1Q14469 280 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 HABP2Q14520 560 aaPredicted RBP12.04□□□□□ -0.48
UPF1-202ENST00000594243 HACD4Q5VWC8 232 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 C11orf88Q6PI97 169 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 GPR141Q7Z602 305 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 TGIF2LXQ8IUE1 241 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 OR4A4PQ8NGN8 299 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 OR56B4Q8NH76 319 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 EDARADDQ8WWZ3 215 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 CFHR4Q92496 578 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 SLC25A46Q96AG3 418 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 SLC25A33Q9BSK2 321 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 PIPOXQ9P0Z9 390 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 SLC23A1Q9UHI7 598 aa12.04□□□□□ -0.48
UPF1-202ENST00000594243 LANCL1O43813 399 aa12.03□□□□□ -0.48
UPF1-202ENST00000594243 SNRNP70P08621 437 aaKnown RBP12.03□□□□□ -0.48
UPF1-202ENST00000594243 DTYMKP23919 212 aa12.03□□□□□ -0.48
UPF1-202ENST00000594243 ALDH3B2P48448 385 aa12.03□□□□□ -0.48
UPF1-202ENST00000594243 PNLIPRP3Q17RR3 467 aa12.03□□□□□ -0.48
UPF1-202ENST00000594243 ZNF260Q3ZCT1 412 aa12.03□□□□□ -0.48
UPF1-202ENST00000594243 GPR107Q5VW38 600 aa12.03□□□□□ -0.48
UPF1-202ENST00000594243 KCTD12Q96CX2 325 aaKnown RBP12.03□□□□□ -0.48
UPF1-202ENST00000594243 S100A16Q96FQ6 103 aaKnown RBP12.03□□□□□ -0.48
UPF1-202ENST00000594243 DCSTAMPQ9H295 470 aa12.03□□□□□ -0.48
UPF1-202ENST00000594243 M0QZK8 103 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 FABP7O15540 132 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 GABARAPO95166 117 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 DIRAS3O95661 229 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 GSTT2P0CG29 244 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 GSTT2BP0CG30 244 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 TMEM11P17152 192 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 CD1BP29016 333 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 RORCP51449 518 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 PROK1P58294 105 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 GNG2P59768 71 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 EBI3Q14213 229 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 Q6ZS49 121 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 WFDC12Q8WWY7 111 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 SLC25A38Q96DW6 304 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 S1PR3Q99500 378 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 ABCG5Q9H222 651 aa12.02□□□□□ -0.49
UPF1-202ENST00000594243 ZNF230Q9UIE0 474 aaPredicted RBP12.02□□□□□ -0.49
UPF1-202ENST00000594243 TRAV18A0A075B6X5 111 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 RAB29O14966 203 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 IGKV1D-33P01593 117 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 IGKV1-33P01594 117 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 BLCAPP62952 87 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 CTF1Q16619 201 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 ARSJQ5FYB0 599 aaPredicted RBP12.01□□□□□ -0.49
UPF1-202ENST00000594243 UBE2NLQ5JXB2 153 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 FAM71F2Q6NXP2 309 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 ODF3L1Q8IXM7 274 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 IZUMO1Q8IYV9 350 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 Q8N2B8 174 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 OR2T10Q8NGZ9 312 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 OR10J5Q8NHC4 309 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 ACOT12Q8WYK0 555 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 ST6GALNAC5Q9BVH7 336 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 ZNF702PQ9H963 129 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 OR1A1Q9P1Q5 309 aa12.01□□□□□ -0.49
UPF1-202ENST00000594243 ELF5Q9UKW6 265 aaPredicted RBP12.01□□□□□ -0.49
UPF1-202ENST00000594243 IGKV1-6A0A0C4DH72 117 aa12□□□□□ -0.49
UPF1-202ENST00000594243 TMEM235A6NFC5 223 aa12□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms