RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 HLA-DRB3P79483 266 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 TPRA1Q86W33 373 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 IZUMO1Q8IYV9 350 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 LYG1Q8N1E2 194 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 TSPAN14Q8NG11 270 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 WIPF2Q8TF74 440 aaPredicted RBP12.51□□□□□ -0.41
LIG3-215ENST00000592690 RAB3CQ96E17 227 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 KCTD7Q96MP8 289 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 YPEL2Q96QA6 119 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 CMSS1Q9BQ75 279 aaKnown RBP12.51□□□□□ -0.41
LIG3-215ENST00000592690 CENPOQ9BU64 300 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 WNT10AQ9GZT5 417 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 RIMS4Q9H426 269 aaPredicted RBP12.51□□□□□ -0.41
LIG3-215ENST00000592690 Q9N2K0 584 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 C12orf4Q9NQ89 552 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 ABRACLQ9P1F3 81 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 MGAM2Q2M2H8 2515 aa12.51□□□□□ -0.41
LIG3-215ENST00000592690 ZNF736B4DX44 427 aaPredicted RBP12.5□□□□□ -0.41
LIG3-215ENST00000592690 RAB27BO00194 218 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 TSPAN15O95858 294 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 LPLP06858 475 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 MXD1Q05195 221 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 EBI3Q14213 229 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 STEAP3Q658P3 488 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 TGIF2LXQ8IUE1 241 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 ODF3L1Q8IXM7 274 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 OR10R2Q8NGX6 335 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 EAF1Q96JC9 268 aaPredicted RBP12.5□□□□□ -0.41
LIG3-215ENST00000592690 PARP12Q9H0J9 701 aaKnown RBP12.5□□□□□ -0.41
LIG3-215ENST00000592690 DAPK2Q9UIK4 370 aa12.5□□□□□ -0.41
LIG3-215ENST00000592690 A0A075B6Q4 140 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 A0A087WXM4 84 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 MFNGO00587 321 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 TXNL1O43396 289 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 LANCL1O43813 399 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 PEX14O75381 377 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 RGS11O94810 467 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 CD28P10747 220 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 SNRPBP14678 240 aaKnown RBP12.49□□□□□ -0.41
LIG3-215ENST00000592690 GNB3P16520 340 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 C9orf152Q5JTZ5 239 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 LY6G6FQ5SQ64 297 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 SFXN4Q6P4A7 337 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 Q8N6K4 173 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 C5orf56Q8N8D9 126 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 PTX4Q96A99 478 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 IFI27L2Q9H2X8 130 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 OR1A1Q9P1Q5 309 aa12.49□□□□□ -0.41
LIG3-215ENST00000592690 M0QZK8 103 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 ST8SIA5O15466 376 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 FBXO24O75426 580 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 SCTP09683 121 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 CD3GP09693 182 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 HIST1H1DP16402 221 aaKnown RBP12.48□□□□□ -0.41
LIG3-215ENST00000592690 CD1BP29016 333 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 TGFBR1P36897 503 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 OR3A3P47888 321 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 OR2AK2Q8NG84 335 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 LGALS14Q8TCE9 139 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 ATG5Q9H1Y0 275 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 SLC23A1Q9UHI7 598 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 MGAT4AQ9UM21 535 aa12.48□□□□□ -0.41
LIG3-215ENST00000592690 SAA2-SAA4A0A096LPE2 208 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 IGKV1-6A0A0C4DH72 117 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 METTL21EPA6NDL7 271 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 SAA2P0DJI9 122 aaPredicted RBP12.47□□□□□ -0.41
LIG3-215ENST00000592690 LSAMPQ13449 338 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 C2orf68Q2NKX9 166 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 ZNF833PQ6ZTB9 187 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 OR2T10Q8NGZ9 312 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 MAFIPQ8WZ33 124 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 YIPF6Q96EC8 236 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 MRPL20Q9BYC9 149 aaKnown RBP12.47□□□□□ -0.41
LIG3-215ENST00000592690 VCX3AQ9NNX9 186 aa12.47□□□□□ -0.41
LIG3-215ENST00000592690 ELF5Q9UKW6 265 aaPredicted RBP12.47□□□□□ -0.41
LIG3-215ENST00000592690 TRIM64CA6NLI5 447 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 TRDCB7Z8K6 153 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 FGF16O43320 207 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 FCGR3AP08637 254 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 MRPS15P82914 257 aaKnown RBP12.46□□□□□ -0.41
LIG3-215ENST00000592690 C10orf99Q6UWK7 81 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 OR5H6Q8NGV6 325 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 CITED2Q99967 270 aaPredicted RBP12.46□□□□□ -0.41
LIG3-215ENST00000592690 NABP2Q9BQ15 211 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 MMP27Q9H306 513 aa12.46□□□□□ -0.41
LIG3-215ENST00000592690 ZNF230Q9UIE0 474 aaPredicted RBP12.46□□□□□ -0.41
LIG3-215ENST00000592690 NCBP2LA6PVI3 153 aaKnown RBP12.45□□□□□ -0.42
LIG3-215ENST00000592690 SERPINE3A8MV23 424 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 HSPA12AO43301 675 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 AIREO43918 545 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 MOSP00540 346 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 CSF1P09603 554 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 ZBTB25P24278 435 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 CEACAM6P40199 344 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 ARFRP1Q13795 201 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 TIMM50Q3ZCQ8 353 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 RPL39P5Q59GN2 51 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 IDNKQ5T6J7 187 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 Q8N9W7 124 aa12.45□□□□□ -0.42
LIG3-215ENST00000592690 OR5AU1Q8NGC0 362 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms