RNA–Protein interactions for RNA: ENST00000592604.5

SMARCA4-219, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 4, humanhuman

TSL 1 (best)

Gene SMARCA4, Length 2,940 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCA4-219ENST00000592604 IFNA1P01562 189 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 IGLV2-14P01704 120 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 METTL15P1P0C7V9 234 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 CCNOP22674 350 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 C1orf185Q5T7R7 199 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 OR5R1Q8NH85 324 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 IFI44Q8TCB0 444 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 C2orf88Q9BSF0 95 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 PRRG4Q9BZD6 226 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 FREM1Q5H8C1 2179 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 CHD3Q12873 2000 aaKnown RBP12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 CD300LBA8K4G0 201 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 MRPL33O75394 65 aaKnown RBP12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 IGKV1-5P01602 117 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 FOLR3P41439 243 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 CXCL12P48061 93 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 GFRA1P56159 465 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 C4orf17Q53FE4 359 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 UNQ6494/PRO21346Q6UXR6 183 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 OR10A7Q8NGE5 316 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 STRADBQ9C0K7 418 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 WDR61Q9GZS3 305 aaKnown RBP12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 SRD5A3Q9H8P0 318 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 CFAP54Q96N23 3096 aa12.62□□□□□ -0.39
SMARCA4-219ENST00000592604 C5orf49A4QMS7 147 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 CEBPZOSA8MTT3 80 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 DEGS1O15121 323 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 PFN1P07737 140 aaKnown RBP12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 IAPPP10997 89 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 CCL4P13236 92 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 PAX1P15863 534 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 LYSMD4Q5XG99 296 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 OR4X1Q8NH49 305 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 HIST1H2AAQ96QV6 131 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 ZNF552Q9H707 407 aaPredicted RBP12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 DEPPQ9NTK1 212 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 NAT8Q9UHE5 227 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 MAP1LC3B2A6NCE7 125 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 HS3ST1O14792 307 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 CCL2P13500 99 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 DDTP30046 118 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 HLA-BQ31612 363 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 OR5P3Q8WZ94 311 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 RDH5Q92781 318 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 MAP1LC3BQ9GZQ8 125 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 ASCL3Q9NQ33 180 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 DLL3Q9NYJ7 618 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 SMCO3A2RU48 225 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 JMJD7P0C870 316 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 IL2RGP31785 369 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 CYP2G1PQ6ZSU1 146 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 CENPVQ7Z7K6 275 aaPredicted RBP12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 TMEM183AQ8IXX5 376 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 RNASEH2CQ8TDP1 164 aaKnown RBP12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 SNX22Q96L94 193 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 OR4C12Q96R67 309 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 FSCN3Q9NQT6 498 aa12.61□□□□□ -0.39
SMARCA4-219ENST00000592604 TSTD3H0UI37 97 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 Q0VFX4 171 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 TRA2AQ13595 282 aaKnown RBP eCLIP12.6□□□□□ -0.392e-6■■■■□ 23.6
SMARCA4-219ENST00000592604 ZNF585BQ52M93 769 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 FAM58AQ8N1B3 248 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 RBKSQ9H477 322 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 TIMM9Q9Y5J7 89 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 KIAA2026Q5HYC2 2103 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 DVL1O14640 695 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 CIDEAO60543 219 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 ZNF737O75373 536 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 IGHEP01854 428 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 IGFBP4P22692 258 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 NUTF2P61970 127 aaKnown RBP12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 TESK1Q15569 626 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 ZNF488Q96MN9 340 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 OR1A1Q9P1Q5 309 aa12.6□□□□□ -0.39
SMARCA4-219ENST00000592604 A0A096LPE4 126 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 A0A1W2PPZ6 126 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 NTN3O00634 580 aaPredicted RBP12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 ZNHIT1O43257 154 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 NGFP01138 241 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 GDF1P27539 372 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 JOSD1Q15040 202 aaPredicted RBP12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 COA6Q5JTJ3 125 aaKnown RBP12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 ZNF573Q86YE8 665 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 TGIF2LYQ8IUE0 185 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 TAF15Q92804 592 aaKnown RBP eCLIP12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 ATG101Q9BSB4 218 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 ZNF503-AS2A6NEH8 195 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 CD46P15529 392 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 TMEM241Q24JQ0 296 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 NCR3LG1Q68D85 454 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 SMIM7Q9BQ49 75 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 PRSS50Q9UI38 385 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 MPC1Q9Y5U8 109 aa12.59□□□□□ -0.39
SMARCA4-219ENST00000592604 PINLYPA6NC86 204 aa12.58□□□□□ -0.39
SMARCA4-219ENST00000592604 OR5B21A6NL26 309 aa12.58□□□□□ -0.39
SMARCA4-219ENST00000592604 FAM90A26D6RGX4 464 aa12.58□□□□□ -0.39
SMARCA4-219ENST00000592604 PPP1R32Q7Z5V6 425 aa12.58□□□□□ -0.39
SMARCA4-219ENST00000592604 RPP25LQ8N5L8 163 aaKnown RBP12.58□□□□□ -0.39
SMARCA4-219ENST00000592604 LHX4Q969G2 390 aa12.58□□□□□ -0.39
SMARCA4-219ENST00000592604 POM121L2Q96KW2 1035 aa12.58□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms