RNA–Protein interactions for RNA: ENST00000588713.1

LIG3-211, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 467 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-211ENST00000588713 SLC10A1Q14973 349 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 RAB35Q15286 201 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CD226Q15762 336 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 HAGHQ16775 308 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CT45A2Q5DJT8 189 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DMRTC1Q5HYR2 192 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 AKR1C8PQ5T2L2 129 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 GGNBP1Q5YKI7 109 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR2T2Q6IF00 324 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 KLHL24Q6TFL4 600 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CBLN3Q6UW01 205 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 TMEM182Q6ZP80 229 aaPredicted RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 SLC25A26Q70HW3 274 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 SLC16A14Q7RTX9 510 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CPEB2Q7Z5Q1 589 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 RPS19BP1Q86WX3 136 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 TGIF2LXQ8IUE1 241 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FAM89BQ8N5H3 189 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 TMEM251Q8N6I4 163 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR4N2Q8NGD1 307 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR5T3Q8NGG3 340 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR52N4Q8NGI2 321 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR13C9Q8NGT0 318 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR14K1Q8NGZ2 314 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR14L1PQ8NHC6 308 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FAM110DQ8TAY7 271 aaPredicted RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 ASB10Q8WXI3 467 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ERGIC1Q969X5 290 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CMBLQ96DG6 245 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 GNPNAT1Q96EK6 184 aaPredicted RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 MVB12AQ96EY5 273 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 BOD1Q96IK1 185 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ADGRG7Q96K78 797 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 FAM210BQ96KR6 192 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 TRIB1Q96RU8 372 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 SPIN2AQ99865 258 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 SPIN2BQ9BPZ2 258 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 TM2D1Q9BX74 207 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 C1QTNF5Q9BXJ0 243 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 GPR61Q9BZJ8 451 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR8D2Q9GZM6 311 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 TGIF2Q9GZN2 237 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 CTDSP1Q9GZU7 261 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 OR10A2Q9H208 303 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 C11orf1Q9H5F2 150 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 NAA60Q9H7X0 242 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 DEPPQ9NTK1 212 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 AK3Q9UIJ7 227 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 LSM5Q9Y4Y9 91 aaKnown RBP3.53□□□□□ -1.84
LIG3-211ENST00000588713 PUS1Q9Y606 427 aaKnown RBP eCLIP3.53□□□□□ -1.84
LIG3-211ENST00000588713 V9GYS6 101 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ROS1P08922 2347 aa3.53□□□□□ -1.84
LIG3-211ENST00000588713 ZNF407Q9C0G0 2248 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 COL7A1Q02388 2944 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 TRGV5A0A0B4J1U4 118 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 TRAV1-1A0A0B4J248 108 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 PIGBOS1A0A0B4J2F0 54 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 A0A1B0GU03 582 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 A0A1W2PNV4 684 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 MARCH11A6NNE9 402 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ZNF732B4DXR9 585 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ZNF878C9JN71 531 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 H0YL77 283 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 CLDN34H7C241 214 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ETV2O00321 342 aaPredicted RBP3.52□□□□□ -1.85
LIG3-211ENST00000588713 CYB5BO43169 146 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ST8SIA3O43173 380 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 HSPA12AO43301 675 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 SLC16A7O60669 478 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 RAMP1O60894 148 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 NPIPB7O75200 414 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 AHSA1O95433 338 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 CDS2O95674 445 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 SCGB1D2O95969 90 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 IFNA1P01562 189 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 MBP02144 154 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 TTRP02766 147 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 TRGC2P03986 189 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 CLPSP04118 112 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 HCKP08631 526 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 TRGC1P0CF51 173 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 OR13C7P0DN81 318 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 GZMBP10144 247 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ZNF43P17038 809 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 PGCP20142 388 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 GCH1P30793 250 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 GNALP38405 381 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 POLR2HP52434 150 aaKnown RBP3.52□□□□□ -1.85
LIG3-211ENST00000588713 SNU13P55769 128 aaKnown RBP3.52□□□□□ -1.85
LIG3-211ENST00000588713 MTCP1P56278 107 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 CSNK2A1P68400 391 aaPredicted RBP3.52□□□□□ -1.85
LIG3-211ENST00000588713 HLA-DRB3P79483 266 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 TNFRSF9Q07011 255 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ZP4Q12836 540 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 FOXF2Q12947 444 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 SCGB2A2Q13296 93 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ARFRP1Q13795 201 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 TMEM187Q14656 261 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 ICAM4Q14773 271 aa3.52□□□□□ -1.85
LIG3-211ENST00000588713 USF2Q15853 346 aaPredicted RBP3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms