RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 TOLLIPQ9H0E2 274 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 ONECUT1Q9UBC0 465 aa20.58■□□□□ 0.89
SHMT1-207ENST00000580002 C17orf98A8MV24 154 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 PEX14O75381 377 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 IGLV2-14P01704 120 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 AKR1C4P17516 323 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 GNG10P50151 68 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 PHLDA2Q53GA4 152 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 ZNF818PQ6ZRF7 136 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 NINJ1Q92982 152 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 DACT3Q96B18 629 aaPredicted RBP20.57■□□□□ 0.88
SHMT1-207ENST00000580002 ABHD14BQ96IU4 210 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 JPT1Q9UK76 154 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 PSG11Q9UQ72 335 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 ALG5Q9Y673 324 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 CT45A1Q5HYN5 189 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 CT45A3Q8NHU0 189 aa20.57■□□□□ 0.88
SHMT1-207ENST00000580002 YPEL1O60688 119 aa20.56■□□□□ 0.88
SHMT1-207ENST00000580002 IGHV1-8P0DP01 117 aa20.56■□□□□ 0.88
SHMT1-207ENST00000580002 C1orf229Q6ZS94 237 aaPredicted RBP20.56■□□□□ 0.88
SHMT1-207ENST00000580002 RAB39BQ96DA2 213 aa20.56■□□□□ 0.88
SHMT1-207ENST00000580002 YPEL2Q96QA6 119 aa20.56■□□□□ 0.88
SHMT1-207ENST00000580002 AGMATQ9BSE5 352 aa20.56■□□□□ 0.88
SHMT1-207ENST00000580002 RSRP1Q9BUV0 290 aa20.56■□□□□ 0.88
SHMT1-207ENST00000580002 WNK2Q9Y3S1 2297 aa20.55■□□□□ 0.88
SHMT1-207ENST00000580002 A0A0A6YYJ9 748 aa20.55■□□□□ 0.88
SHMT1-207ENST00000580002 LIPFP07098 398 aa20.55■□□□□ 0.88
SHMT1-207ENST00000580002 LUMP51884 338 aaPredicted RBP20.55■□□□□ 0.88
SHMT1-207ENST00000580002 RBM7Q9Y580 266 aaKnown RBP20.55■□□□□ 0.88
SHMT1-207ENST00000580002 A8MXK9 166 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 RNF223E7ERA6 249 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 TNFSF12O43508 249 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 USF1P22415 310 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-207ENST00000580002 MECP2P51608 486 aaKnown RBP20.54■□□□□ 0.88
SHMT1-207ENST00000580002 UCP3P55916 312 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 METTL11BQ5VVY1 283 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 CD276Q5ZPR3 534 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 SLC25A42Q86VD7 318 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 ZNF439Q8NDP4 499 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 Q96MF0 132 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 PRR13Q9NZ81 148 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 AKAP9Q99996 3911 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 CTSDP07339 412 aaPredicted RBP20.54■□□□□ 0.88
SHMT1-207ENST00000580002 SLC25A16P16260 332 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 LINC00205P59089 165 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 UBE2MP61081 183 aaKnown RBP20.54■□□□□ 0.88
SHMT1-207ENST00000580002 PPP1R1AQ13522 171 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 CADM3Q8N126 398 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 SIRT7Q9NRC8 400 aa20.54■□□□□ 0.88
SHMT1-207ENST00000580002 ZNF469Q96JG9 3925 aaPredicted RBP20.53■□□□□ 0.88
SHMT1-207ENST00000580002 OR4E1P0C645 316 aa20.53■□□□□ 0.88
SHMT1-207ENST00000580002 RBMXL1Q96E39 390 aaKnown RBP20.53■□□□□ 0.88
SHMT1-207ENST00000580002 OR2D2Q9H210 308 aa20.53■□□□□ 0.88
SHMT1-207ENST00000580002 KCNS2Q9ULS6 477 aa20.53■□□□□ 0.88
SHMT1-207ENST00000580002 PROP1O75360 226 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 DHFRP00374 187 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 RAG2P55895 527 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 PIGPP57054 158 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 SUPT4H1P63272 117 aaKnown RBP20.52■□□□□ 0.88
SHMT1-207ENST00000580002 CBX3Q13185 183 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 SURF2Q15527 256 aaPredicted RBP20.52■□□□□ 0.88
SHMT1-207ENST00000580002 GLDNQ6ZMI3 551 aaPredicted RBP20.52■□□□□ 0.88
SHMT1-207ENST00000580002 SLC38A6Q8IZM9 456 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 WFDC11Q8NEX6 87 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 OR52M1Q8NGK5 317 aa20.52■□□□□ 0.88
SHMT1-207ENST00000580002 IGHV2-70DA0A0C4DH43 119 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 C4orf46Q504U0 113 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 OR2AK2Q8NG84 335 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 ZFAND1Q8TCF1 268 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 IFI27L2Q9H2X8 130 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 GHITMQ9H3K2 345 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 SLC2A9Q9NRM0 540 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 C14orf166Q9Y224 244 aaKnown RBP20.51■□□□□ 0.87
SHMT1-207ENST00000580002 BTNL3Q6UXE8 466 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 DRAM1Q8N682 238 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 OR10A7Q8NGE5 316 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 SESN1Q9Y6P5 492 aa20.51■□□□□ 0.87
SHMT1-207ENST00000580002 FOXH1O75593 365 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 KLRD1Q13241 179 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 RPL39P5Q59GN2 51 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 PDZD9Q8IXQ8 264 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 SCGB3A2Q96PL1 93 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 ABHD14AQ9BUJ0 271 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 REG4Q9BYZ8 158 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 ALX4Q9H161 411 aaPredicted RBP20.5■□□□□ 0.87
SHMT1-207ENST00000580002 RAB9BQ9NP90 201 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 ZANQ9Y493 2812 aa20.5■□□□□ 0.87
SHMT1-207ENST00000580002 ENSAO43768 121 aaKnown RBP20.49■□□□□ 0.87
SHMT1-207ENST00000580002 COX7A1P24310 79 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 ECI1P42126 302 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 DHODHQ02127 395 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 SP6Q3SY56 376 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 ABCA11PQ4W5N1 156 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 ODF3L1Q8IXM7 274 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 ABHD12Q8N2K0 398 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 TMEM133Q9H2Q1 129 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 SDHAF2Q9NX18 166 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 NOTCH2Q04721 2471 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 C7orf66A4D0T2 115 aa20.49■□□□□ 0.87
SHMT1-207ENST00000580002 GPR31O00270 319 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms