RNA–Protein interactions for RNA: ENST00000578954.5

SS18-211, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 756 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-211ENST00000578954 CENPSQ8N2Z9 138 aa13.21□□□□□ -0.29
SS18-211ENST00000578954 OR10V1Q8NGI7 309 aa13.21□□□□□ -0.29
SS18-211ENST00000578954 MARVELD1Q9BSK0 173 aa13.21□□□□□ -0.29
SS18-211ENST00000578954 METTL8Q9H825 291 aaKnown RBP13.21□□□□□ -0.29
SS18-211ENST00000578954 ONECUT1Q9UBC0 465 aa13.21□□□□□ -0.29
SS18-211ENST00000578954 GPR132Q9UNW8 380 aa13.21□□□□□ -0.29
SS18-211ENST00000578954 TRAV20A0A0B4J274 112 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 FAM172BPA6NC97 362 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 NFYBP25208 207 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 MECP2P51608 486 aaKnown RBP13.2□□□□□ -0.3
SS18-211ENST00000578954 LUMP51884 338 aaPredicted RBP13.2□□□□□ -0.3
SS18-211ENST00000578954 DVL1P1P54792 670 aaPredicted RBP13.2□□□□□ -0.3
SS18-211ENST00000578954 RAG2P55895 527 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 ARF6P62330 175 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 MSMO1Q15800 293 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 TRIM16LQ309B1 348 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 PLET1Q6UQ28 207 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 LINC00311Q8N616 119 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 LINC01356Q8N9X3 169 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 MARCH1Q8TCQ1 289 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 TNFRSF14Q92956 283 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 CREB3L1Q96BA8 519 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 UPRTQ96BW1 309 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 SCGB3A2Q96PL1 93 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 AGMATQ9BSE5 352 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 C20orf85Q9H1P6 137 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 TMEM133Q9H2Q1 129 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 VSIG4Q9Y279 399 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 NOTCH2Q04721 2471 aa13.2□□□□□ -0.3
SS18-211ENST00000578954 WNK2Q9Y3S1 2297 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 CTSDP07339 412 aaPredicted RBP13.19□□□□□ -0.3
SS18-211ENST00000578954 GATA3P23771 443 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 RAB7AP51149 207 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 ZNF134P52741 427 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 TMEM249Q2WGJ8 235 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 CT45A1Q5HYN5 189 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 LPCAT3Q6P1A2 487 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 SLC25A48Q6ZT89 311 aaKnown RBP13.19□□□□□ -0.3
SS18-211ENST00000578954 SLC38A6Q8IZM9 456 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 CT45A3Q8NHU0 189 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 ZNF486Q96H40 463 aaPredicted RBP13.19□□□□□ -0.3
SS18-211ENST00000578954 RSRP1Q9BUV0 290 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 SUCNR1Q9BXA5 334 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 MMP28Q9H239 520 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 IFI27L2Q9H2X8 130 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 LPAR2Q9HBW0 351 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 NUDT15Q9NV35 164 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 PSG11Q9UQ72 335 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 GAB2Q9UQC2 676 aa13.19□□□□□ -0.3
SS18-211ENST00000578954 SLC31A2O15432 143 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 IGHV4-31P0DP07 118 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 GNRHRP30968 328 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 GZMKP49863 264 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 FXYD4P59646 89 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 METTL11BQ5VVY1 283 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 HCP5Q6MZN7 132 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 OR2AK2Q8NG84 335 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 OR9G1Q8NH87 305 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 ZFAND1Q8TCF1 268 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 TOMM40LQ969M1 308 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 TMEM186Q96B77 213 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 RTBDNQ9BSG5 229 aaPredicted RBP13.18□□□□□ -0.3
SS18-211ENST00000578954 ABHD14AQ9BUJ0 271 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 SLC5A7Q9GZV3 580 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 ALX4Q9H161 411 aaPredicted RBP13.18□□□□□ -0.3
SS18-211ENST00000578954 GHITMQ9H3K2 345 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 C5orf66Q9H5L9 145 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 FLNBO75369 2602 aaKnown RBP13.18□□□□□ -0.3
SS18-211ENST00000578954 VPS13CQ709C8 3753 aa13.18□□□□□ -0.3
SS18-211ENST00000578954 CSMD1Q96PZ7 3565 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 IGHV2-26A0A0B4J1V2 119 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 ARPC1BO15143 372 aaKnown RBP13.17□□□□□ -0.3
SS18-211ENST00000578954 SLC22A5O76082 557 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 IGLV1-47P01700 117 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 IGLV2-14P01704 120 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 H2AFB2P0C5Z0 115 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 OR8U9P0C7N5 309 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 PGAM2P15259 253 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 RND3P61587 244 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 ABHD12Q8N2K0 398 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 ZNF645Q8N7E2 425 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 BEND2Q8NDZ0 799 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 BVESQ8NE79 360 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 OR11H6Q8NGC7 330 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 OR8U1Q8NH10 309 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 LEAP2Q969E1 77 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 MSI2Q96DH6 328 aaKnown RBP13.17□□□□□ -0.3
SS18-211ENST00000578954 AKR1E2Q96JD6 320 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 TBX15Q96SF7 602 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 HEXA-AS1Q9H8Q6 139 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 SIRT7Q9NRC8 400 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 FLVCR2Q9UPI3 526 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 ITPR3Q14573 2671 aa13.17□□□□□ -0.3
SS18-211ENST00000578954 INMT-MINDY4F8WBC2 141 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 J3QR06 171 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 ST8SIA5O15466 376 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 PEX14O75381 377 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 ZNF137PP52743 207 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 BAMBIQ13145 260 aa13.16□□□□□ -0.3
SS18-211ENST00000578954 DCAF12L2Q5VW00 463 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms