RNA–Protein interactions for RNA: ENST00000576241.1

CCDC40-216, Transcript of coiled-coil domain containing 40, humanhuman

TSL 2

Gene CCDC40, Length 714 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-216ENST00000576241 RBM48Q5RL73 367 aaKnown RBP10.73□□□□□ -0.69
CCDC40-216ENST00000576241 OGFRL1Q5TC84 451 aaPredicted RBP10.73□□□□□ -0.69
CCDC40-216ENST00000576241 GLT8D1Q68CQ7 371 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 TMEM65Q6PI78 240 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 LCNL1Q6ZST4 164 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 RNF152Q8N8N0 203 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 C4orf3Q8WVX3 66 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 PHYHIPQ92561 330 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 ZNF251Q9BRH9 671 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 TMED9Q9BVK6 235 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 TMEM59Q9BXS4 323 aa10.73□□□□□ -0.69
CCDC40-216ENST00000576241 CASQ2O14958 399 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-216ENST00000576241 YPEL1O60688 119 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 CHATP28329 748 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 ACTBP60709 375 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 CFHR3Q02985 330 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 INSL4Q14641 139 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 FAM27D1Q5T7N8 215 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 OR2AK2Q8NG84 335 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 IL1F10Q8WWZ1 152 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 RBMXL1Q96E39 390 aaKnown RBP10.72□□□□□ -0.69
CCDC40-216ENST00000576241 KCTD7Q96MP8 289 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 YPEL2Q96QA6 119 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 B9D2Q9BPU9 175 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 CHCHD6Q9BRQ6 235 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 MRPL20Q9BYC9 149 aaKnown RBP10.72□□□□□ -0.69
CCDC40-216ENST00000576241 CHMP1AQ9HD42 196 aaPredicted RBP10.72□□□□□ -0.69
CCDC40-216ENST00000576241 FKBP14Q9NWM8 211 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 STEAP1Q9UHE8 339 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 ZNF580Q9UK33 172 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 HYDINQ4G0P3 5121 aa10.72□□□□□ -0.69
CCDC40-216ENST00000576241 PTGES3LE9PB15 166 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 RAMP3O60896 148 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 CDK1P06493 297 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 PSMB8P28062 276 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 RPS27AP62979 156 aaKnown RBP10.71□□□□□ -0.69
CCDC40-216ENST00000576241 SPHARQ15513 63 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 HSD17B12Q53GQ0 312 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 LY6G6FQ5SQ64 297 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 C1orf100Q5SVJ3 147 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 C6orf141Q5SZD1 244 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 C9orf66Q5T8R8 295 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 RNLSQ5VYX0 342 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 C6orf201Q7Z4U5 140 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 KCNG3Q8TAE7 436 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 NABP2Q9BQ15 211 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 SULT4A1Q9BR01 284 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 FAAP24Q9BTP7 215 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 GAR1Q9NY12 217 aaKnown RBP10.71□□□□□ -0.69
CCDC40-216ENST00000576241 SCN3BQ9NY72 215 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 KIAA1456Q9P272 454 aa10.71□□□□□ -0.69
CCDC40-216ENST00000576241 SAA2-SAA4A0A096LPE2 208 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 C3orf84H3BNL1 204 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 NBR2O15453 112 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 HLA-DRB1P01911 266 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 SAA2P0DJI9 122 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-216ENST00000576241 HTR2CP28335 458 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 LUMP51884 338 aaPredicted RBP10.7□□□□□ -0.7
CCDC40-216ENST00000576241 HMGN3Q15651 99 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 OR10K2Q6IF99 312 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 ZNF833PQ6ZTB9 187 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 MOB1BQ7L9L4 216 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 CEACAM19Q7Z692 300 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 LRRTM1Q86UE6 522 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 ODF3L1Q8IXM7 274 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 SETD6Q8TBK2 473 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 CYYR1Q96J86 154 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 PARP11Q9NR21 331 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 WSB1Q9Y6I7 421 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 DNAH1Q9P2D7 4330 aa10.7□□□□□ -0.7
CCDC40-216ENST00000576241 SEC14L6B5MCN3 397 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 ATP6V0E1O15342 81 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 SRMP19623 302 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 BLVRBP30043 206 aaPredicted RBP10.69□□□□□ -0.7
CCDC40-216ENST00000576241 OR3A3P47888 321 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 MED22Q15528 200 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 C5orf64Q2M2E5 130 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 LIN54Q6MZP7 749 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 FAM71F2Q6NXP2 309 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 C5orf24Q7Z6I8 188 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 SVOPQ8N4V2 548 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 OR6M1Q8NGM8 313 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 TM2D1Q9BX74 207 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 OR51J1Q9H342 316 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 PLEKHJ1Q9NW61 149 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 PIPOXQ9P0Z9 390 aa10.69□□□□□ -0.7
CCDC40-216ENST00000576241 TRAV41A0A0B4J266 112 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 RAB29O14966 203 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 SLC22A1O15245 554 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 BPNT1O95861 308 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 UCHL1P09936 223 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 CNTFRP26992 372 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 UNC119Q13432 240 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 FHL3Q13643 280 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 OR11H1Q8NG94 326 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 UFD1Q92890 307 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 RITA1Q96K30 269 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 UBE2E2Q96LR5 201 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 NICN1Q9BSH3 213 aa10.68□□□□□ -0.7
CCDC40-216ENST00000576241 URM1Q9BTM9 101 aaKnown RBP10.68□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms