RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 LRP1Q07954 4544 aaKnown RBP11.71□□□□□ -0.53
VPS53-218ENST00000575207 TMEM30CPA0ZSE6 113 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 OCM2P0CE71 109 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 OCMP0CE72 109 aaPredicted RBP11.71□□□□□ -0.53
VPS53-218ENST00000575207 ACTR3P61158 418 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 FXYD3Q14802 87 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 MAPRE2Q15555 327 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 RNF212Q495C1 297 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 SPATS1Q496A3 300 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 ZNF322Q6U7Q0 402 aaPredicted RBP11.71□□□□□ -0.53
VPS53-218ENST00000575207 FAM131AQ6UXB0 335 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 CPOQ8IVL8 374 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 Q8NAQ8 132 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 BBS1Q8NFJ9 593 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 TEX47Q8TBZ9 253 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 CCDC107Q8WV48 283 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 GHSRQ92847 366 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 ADI1Q9BV57 179 aa11.71□□□□□ -0.53
VPS53-218ENST00000575207 DPCDQ9BVM2 203 aaPredicted RBP11.71□□□□□ -0.53
VPS53-218ENST00000575207 METTL1Q9UBP6 276 aaKnown RBP11.71□□□□□ -0.53
VPS53-218ENST00000575207 NACAE9PAV3 2078 aa11.71□□□□□ -0.54
VPS53-218ENST00000575207 DEFB131BA0A096LNP1 70 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 SLC22A1O15245 554 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 DBTP11182 482 aaKnown RBP11.7□□□□□ -0.54
VPS53-218ENST00000575207 SLC2A5P22732 501 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 OR3A3P47888 321 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 LGALS7P47929 136 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 LRP2P98164 4655 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 TMEM30BQ3MIR4 351 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 ODF3L2Q3SX64 289 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 UTS2BQ765I0 119 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 C6orf223Q8N319 242 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 UXS1Q8NBZ7 420 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 KCNG3Q8TAE7 436 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 MCUR1Q96AQ8 359 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 ADAT3Q96EY9 351 aaPredicted RBP11.7□□□□□ -0.54
VPS53-218ENST00000575207 PYURFQ96I23 114 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 TMEM68Q96MH6 324 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 KCTD14Q9BQ13 255 aaPredicted RBP11.7□□□□□ -0.54
VPS53-218ENST00000575207 KRTAP9-2Q9BYQ4 174 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 COA4Q9NYJ1 87 aa11.7□□□□□ -0.54
VPS53-218ENST00000575207 RPL36Q9Y3U8 105 aaKnown RBP11.7□□□□□ -0.54
VPS53-218ENST00000575207 TMEM213A2RRL7 107 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 KRT36O76013 467 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 FABP3P05413 133 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 MAP2K4P45985 399 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 HMGA2P52926 109 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 RBPMS2Q6ZRY4 209 aaKnown RBP11.69□□□□□ -0.54
VPS53-218ENST00000575207 ZNF833PQ6ZTB9 187 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 CROCCP2Q86T23 111 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 ZDHHC13Q8IUH4 622 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 ODF3L1Q8IXM7 274 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 CENPSQ8N2Z9 138 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 SUMF2Q8NBJ7 301 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 RCC2Q9P258 522 aaKnown RBP11.69□□□□□ -0.54
VPS53-218ENST00000575207 DMRT1Q9Y5R6 373 aa11.69□□□□□ -0.54
VPS53-218ENST00000575207 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP11.68□□□□□ -0.54
VPS53-218ENST00000575207 KRTAP9-6A0A140TA67 174 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 SPINT2O43291 252 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 RPP14O95059 124 aaKnown RBP11.68□□□□□ -0.54
VPS53-218ENST00000575207 CCNB2O95067 398 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 S1PR2O95136 353 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 HTR3BO95264 441 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 GSTP1P09211 210 aaKnown RBP11.68□□□□□ -0.54
VPS53-218ENST00000575207 CXCR4P61073 352 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 EXOSC2Q13868 293 aaKnown RBP11.68□□□□□ -0.54
VPS53-218ENST00000575207 IL13RA2Q14627 380 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 GLYATQ6IB77 296 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 BTNL8Q6UX41 500 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 SPAG8Q99932 426 aaPredicted RBP11.68□□□□□ -0.54
VPS53-218ENST00000575207 ABHD14AQ9BUJ0 271 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 RAB9BQ9NP90 201 aa11.68□□□□□ -0.54
VPS53-218ENST00000575207 ZNF230Q9UIE0 474 aaPredicted RBP11.68□□□□□ -0.54
VPS53-218ENST00000575207 LOC107986453A0A1B0GWG9 222 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 TNFRSF11BO00300 401 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 FADS2O95864 444 aaKnown RBP11.67□□□□□ -0.54
VPS53-218ENST00000575207 TMEM225BP0DP42 221 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 MAGOHP61326 146 aaKnown RBP11.67□□□□□ -0.54
VPS53-218ENST00000575207 PSG5Q15238 335 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 ELP2Q6IA86 826 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 GPHB5Q86YW7 130 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 PRR18Q8N4B5 295 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 SCRT1Q9BWW7 348 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 MAGEL2Q9UJ55 1249 aa11.67□□□□□ -0.54
VPS53-218ENST00000575207 A8MWP6 167 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 H3BN98 237 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 RBBP9O75884 186 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 TUSC2O75896 110 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 HLA-AP01891 365 aaKnown RBP11.66□□□□□ -0.54
VPS53-218ENST00000575207 SSBP2P81877 361 aaPredicted RBP11.66□□□□□ -0.54
VPS53-218ENST00000575207 OR5B3Q8NH48 314 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 ASB9Q96DX5 294 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 C17orf77Q96MU5 243 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 CHRDL1Q9BU40 450 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 C6orf62Q9GZU0 229 aaPredicted RBP11.66□□□□□ -0.54
VPS53-218ENST00000575207 MRGBPQ9NV56 204 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 ING4Q9UNL4 249 aa11.66□□□□□ -0.54
VPS53-218ENST00000575207 SAA2-SAA4A0A096LPE2 208 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 A0A0G2JND7 137 aa11.65□□□□□ -0.54
VPS53-218ENST00000575207 PPP5D1E7EU14 171 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms