RNA–Protein interactions for RNA: ENST00000574022.1

CHD3-217, Transcript of chromodomain helicase DNA binding protein 3, human

TSL 2

Gene CHD3, Length 103 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHD3-217	ENST00000574022	CISD3	P0C7P0	127 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	PTHLH	P12272	177 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	CTLA4	P16410	223 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	NTF3	P20783	257 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	MDK	P21741	143 aa	Predicted RBP	1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	GABRA3	P34903	492 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	TGFBR1	P36897	503 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	HSPA9	P38646	679 aa	Known RBP	1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	MAP2K4	P45985	399 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	NOV	P48745	357 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	CTBP2	P56545	445 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	RAB14	P61106	215 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	HERVK_113	P63121	156 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	PRDX4	Q13162	271 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	JOSD1	Q15040	202 aa	Predicted RBP	1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	PTGES3	Q15185	160 aa	Known RBP	1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	SLC9A3R2	Q15599	337 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ZCWPW2	Q504Y3	356 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	LIN52	Q52LA3	116 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	C2orf83	Q53S99	150 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	HES3	Q5TGS1	186 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022		Q5W150	140 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	FAM104B	Q5XKR9	115 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	C5orf46	Q6UWT4	87 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ZNF550	Q7Z398	422 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	CALHM3	Q86XJ0	350 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	AMN1	Q8IY45	258 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	SAXO1	Q8IYX7	474 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ZNF567	Q8N184	647 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	C1orf158	Q8N1D5	194 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	KRTCAP2	Q8N6L1	136 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	YIPF7	Q8N8F6	280 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	FER1L6-AS1	Q8NA97	138 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	OR8S1	Q8NH09	359 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	UBALD1	Q8TB05	177 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	KCTD4	Q8WVF5	259 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	FRZB	Q92765	325 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	RBPMS	Q93062	196 aa	Known RBP	1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	MAL2	Q969L2	176 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	YIPF5	Q969M3	257 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	DCUN1D1	Q96GG9	259 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ABHD14B	Q96IU4	210 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	BTF3L4	Q96K17	158 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	FOPNL	Q96NB1	174 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	OR52E6	Q96RD3	313 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	TRIB3	Q96RU7	358 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	PRRT1	Q99946	306 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	CMSS1	Q9BQ75	279 aa	Known RBP	1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	TMEM109	Q9BVC6	243 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	KRTAP4-11	Q9BYQ6	195 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	PLA2G12A	Q9BZM1	189 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	TRIM4	Q9C037	500 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ALX4	Q9H161	411 aa	Predicted RBP	1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	FAM60A	Q9NP50	221 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	DOK5	Q9P104	306 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ZNF492	Q9P255	531 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ZNF391	Q9UJN7	358 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	RAB26	Q9ULW5	256 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	WASHC3	Q9Y3C0	194 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	FIS1	Q9Y3D6	152 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	RFNG	Q9Y644	331 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ZNF532	Q9HCE3	1301 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	NAV1	Q8NEY1	1877 aa		1.35	□□□□□ -2.19
CHD3-217	ENST00000574022	ARHGAP21	Q5T5U3	1957 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	PIK3C2G	O75747	1445 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	IGHV3-21	A0A0B4J1V1	117 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	IGHV3-43	A0A0B4J1X8	118 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022		A0A1B0GV50	99 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	PQLC2L	A1A4F0	135 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	LINC00862	A6NCI5	91 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	LEUTX	A8MZ59	168 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	IGLL5	B9A064	214 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	EEF1E1-BLOC1S5	C9J1V9	151 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	PGRMC1	O00264	195 aa	Known RBP	1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	EEF1E1	O43324	174 aa	Known RBP	1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	NOS1AP	O75052	506 aa	Predicted RBP	1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	GPR75	O95800	540 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	HAND1	O96004	215 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	PDYN	P01213	254 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	LHB	P01229	141 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	IGHV1-46	P01743	117 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	IL4	P05112	153 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	CST2	P09228	141 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	FAM228B	P0C875	321 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	CDK2	P24941	298 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	NPY1R	P25929	384 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	OR1E2	P47887	323 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	TMEM33	P57088	247 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	PSME3	P61289	254 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	RPL19	P84098	196 aa	Known RBP	1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	DEFA6	Q01524	100 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	ENDOG	Q14249	297 aa	Known RBP	1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	CDK10	Q15131	360 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	ACOT6	Q3I5F7	207 aa	Predicted RBP	1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	FAM201A	Q5SY85	155 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	C1orf194	Q5T5A4	169 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	TMEM42	Q69YG0	159 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	DHRS4L2	Q6PKH6	230 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	ALKAL1	Q6UXT8	129 aa		1.34	□□□□□ -2.19
CHD3-217	ENST00000574022	ZFP2	Q6ZN57	461 aa		1.34	□□□□□ -2.19

Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms