RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 SNRPD2P62316 118 aaKnown RBP4.93□□□□□ -1.62
VPS53-212ENST00000572259 RPL8P62917 257 aaKnown RBP4.93□□□□□ -1.62
VPS53-212ENST00000572259 FLOT2Q14254 428 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 TBC1D28Q2M2D7 210 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 RFX4Q33E94 735 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 BSXQ3C1V8 233 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ACTL10Q5JWF8 245 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 OR2T5Q6IEZ7 315 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP4.93□□□□□ -1.62
VPS53-212ENST00000572259 SMARCD3Q6STE5 483 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ARL9Q6T311 187 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 DRAM2Q6UX65 266 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 C9orf47Q6ZRZ4 202 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 PGAP1Q75T13 922 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 SKA3Q8IX90 412 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ENTHD1Q8IYW4 607 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ABHD12Q8N2K0 398 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 MTURNQ8N3F0 131 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 LRRC18Q8N456 261 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 NUP37Q8NFH4 326 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 OR4D10Q8NGI6 311 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 OR2T29Q8NH02 315 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 OR51F2Q8NH61 342 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 RNASEH2CQ8TDP1 164 aaKnown RBP4.93□□□□□ -1.62
VPS53-212ENST00000572259 NEUROG1Q92886 237 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 ZNF556Q9HAH1 456 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 CA10Q9NS85 328 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 B3GNT2Q9NY97 397 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 SIGLEC7Q9Y286 467 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 WNK2Q9Y3S1 2297 aa4.93□□□□□ -1.62
VPS53-212ENST00000572259 DOCK11Q5JSL3 2073 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 IGHV2OR16-5A0A0B4J2B6 119 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 DHRS12A0PJE2 317 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 ANKRD20A5PA0PJZ0 165 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 TVP23AA6NH52 213 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 CDC42EP2O14613 210 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 SEMG1P04279 462 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 CST2P09228 141 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 CSF3P09919 207 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 OR4A8P0C604 315 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 DTYMKP23919 212 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 GLRXP35754 106 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 EVX1P49640 407 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 BRWD1-AS2P59051 145 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 LINC00205P59089 165 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 RPL24P83731 157 aaKnown RBP4.92□□□□□ -1.62
VPS53-212ENST00000572259 MS4A2Q01362 244 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 KRR1Q13601 381 aaKnown RBP4.92□□□□□ -1.62
VPS53-212ENST00000572259 OXA1LQ15070 435 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 GUK1Q16774 197 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 MICAQ29983 383 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 PDZD11Q5EBL8 140 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 GCSAMLQ5JQS6 135 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 FAM27BQ5VT28 67 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 C10orf67Q8IYJ2 551 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 SLC30A7Q8NEW0 376 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 ZNF519Q8TB69 540 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 C11orf40Q8WZ69 217 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 PTH2Q96A98 100 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 YIPF6Q96EC8 236 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 FBXO17Q96EF6 278 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 Q96M85 177 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 ERMAPQ96PL5 475 aaPredicted RBP4.92□□□□□ -1.62
VPS53-212ENST00000572259 TSPAN32Q96QS1 320 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 GPX7Q96SL4 187 aaPredicted RBP4.92□□□□□ -1.62
VPS53-212ENST00000572259 SH3GL3Q99963 347 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 OVOL2Q9BRP0 275 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 RHNO1Q9BSD3 238 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 TMEM59Q9BXS4 323 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 BCL2L14Q9BZR8 327 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 RERGLQ9H628 205 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 ZNF442Q9H7R0 627 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 MYOZ1Q9NP98 299 aaPredicted RBP4.92□□□□□ -1.62
VPS53-212ENST00000572259 ISYNA1Q9NPH2 558 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 BAIAP2Q9UQB8 552 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 IER3IP1Q9Y5U9 82 aa4.92□□□□□ -1.62
VPS53-212ENST00000572259 YLPM1P49750 1951 aaKnown RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 A0A1B0GU03 582 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 TMEM238C9JI98 176 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 H0Y980 276 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 H7C417 338 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 SLC16A7O60669 478 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 SLC2A10O95528 541 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 SNAP29O95721 258 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 IFNGP01579 166 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 CD8AP01732 235 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 HMGN1P05114 100 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 ALPLP05186 524 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 ZNF35P13682 527 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 HIST1H1CP16403 213 aaKnown RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 ZNF14P17017 642 aaPredicted RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 RPL35AP18077 110 aaKnown RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 ATP6V1B2P21281 511 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 DDOSTP39656 456 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 GSSP48637 474 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 GTF2A1P52655 376 aaPredicted RBP4.91□□□□□ -1.62
VPS53-212ENST00000572259 EFNA4P52798 201 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 HILS1P60008 231 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 RND3P61587 244 aa4.91□□□□□ -1.62
VPS53-212ENST00000572259 LSM6P62312 80 aaKnown RBP4.91□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms