RNA–Protein interactions for RNA: ENST00000568357.1

VPS39-210, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 593 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-210ENST00000568357 MMP27Q9H306 513 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 RIMS4Q9H426 269 aaPredicted RBP11.95□□□□□ -0.5
VPS39-210ENST00000568357 JPT1Q9UK76 154 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 STUB1Q9UNE7 303 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 KCNK7Q9Y2U2 307 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 MOB4Q9Y3A3 225 aa11.95□□□□□ -0.5
VPS39-210ENST00000568357 M0QZK8 103 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 PEX14O75381 377 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 SLC2A2P11168 524 aaPredicted RBP11.94□□□□□ -0.5
VPS39-210ENST00000568357 NEDD8Q15843 81 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 C9orf152Q5JTZ5 239 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 ODF3L1Q8IXM7 274 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 Q8N6K4 173 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 C5orf56Q8N8D9 126 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 IL1F10Q8WWZ1 152 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 ABRACLQ9P1F3 81 aa11.94□□□□□ -0.5
VPS39-210ENST00000568357 FBXO24O75426 580 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 CSF1P09603 554 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 CD1BP29016 333 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 RANBP1P43487 201 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 C2orf68Q2NKX9 166 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 LY6G6FQ5SQ64 297 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 TGIF2LXQ8IUE1 241 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 IZUMO1Q8IYV9 350 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 OR5AU1Q8NGC0 362 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 FAM110DQ8TAY7 271 aaPredicted RBP11.93□□□□□ -0.5
VPS39-210ENST00000568357 CITED2Q99967 270 aaPredicted RBP11.93□□□□□ -0.5
VPS39-210ENST00000568357 ABHD14AQ9BUJ0 271 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 RNF167Q9H6Y7 350 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 Q9N2K0 584 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 SSR3Q9UNL2 185 aa11.93□□□□□ -0.5
VPS39-210ENST00000568357 ADARB2-AS1A8MUL3 147 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 RAB27BO00194 218 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 LANCL1O43813 399 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 SCTP09683 121 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 GADD45AP24522 165 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 OR3A3P47888 321 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 TCTEX1D4Q5JR98 221 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 C10orf99Q6UWK7 81 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 MOB1BQ7L9L4 216 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 CENPVQ7Z7K6 275 aaPredicted RBP11.92□□□□□ -0.5
VPS39-210ENST00000568357 OR10R2Q8NGX6 335 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 OR2T10Q8NGZ9 312 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 RAB3CQ96E17 227 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 CMSS1Q9BQ75 279 aaKnown RBP11.92□□□□□ -0.5
VPS39-210ENST00000568357 CHCHD6Q9BRQ6 235 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 PARP12Q9H0J9 701 aaKnown RBP11.92□□□□□ -0.5
VPS39-210ENST00000568357 C12orf4Q9NQ89 552 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 PLSCR3Q9NRY6 295 aa11.92□□□□□ -0.5
VPS39-210ENST00000568357 LINC01548A6NM66 108 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 NCBP2LA6PVI3 153 aaKnown RBP11.91□□□□□ -0.5
VPS39-210ENST00000568357 NOTOA8MTQ0 251 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 FGF16O43320 207 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 TXNL1O43396 289 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 RGS11O94810 467 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 GNB3P16520 340 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 CD36P16671 472 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 RAB6AP20340 208 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 SDC2P34741 201 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 NSUN5P1Q3KNT7 163 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 TPRA1Q86W33 373 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 OR2AK2Q8NG84 335 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 IFI27L2Q9H2X8 130 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 OR1A1Q9P1Q5 309 aa11.91□□□□□ -0.5
VPS39-210ENST00000568357 A0A075B6Q4 140 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 IGKV1-6A0A0C4DH72 117 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 ST8SIA5O15466 376 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 MOSP00540 346 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 CLEC2LP0C7M8 214 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 CEACAM6P40199 344 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 F2RL1P55085 397 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 HLA-DRB3P79483 266 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 CD83Q01151 205 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 ZNF833PQ6ZTB9 187 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 Q8N9W7 124 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 PTX4Q96A99 478 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 RITA1Q96K30 269 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 KCTD7Q96MP8 289 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 CENPOQ9BU64 300 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 MRPL20Q9BYC9 149 aaKnown RBP11.9□□□□□ -0.5
VPS39-210ENST00000568357 SLC23A1Q9UHI7 598 aa11.9□□□□□ -0.5
VPS39-210ENST00000568357 WNK1Q9H4A3 2382 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 SAA2-SAA4A0A096LPE2 208 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 LOC100506127A0A0U1RQW1 187 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 METTL21EPA6NDL7 271 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 TRDCB7Z8K6 153 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 MFNGO00587 321 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 CD3GP09693 182 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 SAA2P0DJI9 122 aaPredicted RBP11.89□□□□□ -0.51
VPS39-210ENST00000568357 ZBTB25P24278 435 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 MXD1Q05195 221 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 LSAMPQ13449 338 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 NDUFA11Q86Y39 141 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 TSPAN14Q8NG11 270 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 NOL4LQ96MY1 436 aaPredicted RBP11.89□□□□□ -0.51
VPS39-210ENST00000568357 S1PR3Q99500 378 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 NABP2Q9BQ15 211 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 ZNF251Q9BRH9 671 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 AGMATQ9BSE5 352 aa11.89□□□□□ -0.51
VPS39-210ENST00000568357 C11orf54Q9H0W9 315 aaPredicted RBP11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 48.9 ms