RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 CEACAM16Q2WEN9 425 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 CDNFQ49AH0 187 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TTC32Q5I0X7 151 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 HACD4Q5VWC8 232 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 CST9Q5W186 159 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 KCTD16Q68DU8 428 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 LAMTOR1Q6IAA8 161 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 FAM183BPQ6ZVS7 135 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 SMIM15Q7Z3B0 74 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 S100A7AQ86SG5 101 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 LYG2Q86SG7 212 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TAC4Q86UU9 113 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 LYPD6Q86Y78 171 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 ITPRIPQ8IWB1 547 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 OR6V1Q8N148 313 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TBC1D19Q8N5T2 526 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 GATD1Q8NB37 220 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 PXT1Q8NFP0 134 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 GPR32P1Q8NGA4 272 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 OR52E4Q8NGH9 312 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 STOML3Q8TAV4 291 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 FAM57AQ8TBR7 257 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 NT5CQ8TCD5 201 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 NEK7Q8TDX7 302 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 CASTOR1Q8WTX7 329 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 FAM172AQ8WUF8 416 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 CLDN23Q96B33 292 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 PPCDCQ96CD2 204 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TMA16Q96EY4 203 aaKnown RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 CEP19Q96LK0 163 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 RILPQ96NA2 401 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 METTL26Q96S19 204 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 PITX2Q99697 317 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TMED9Q9BVK6 235 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TAPBPLQ9BX59 468 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 SLC22A4Q9H015 551 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 MS4A6AQ9H2W1 248 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 MAP1LC3AQ9H492 121 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TRABDQ9H4I3 376 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 METTL17Q9H7H0 456 aaPredicted RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 RHOFQ9HBH0 211 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 C8orf4Q9NR00 106 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 CTNNBIP1Q9NSA3 81 aaPredicted RBP0.83□□□□□ -2.28
VPS35-207ENST00000568191 RBM22Q9NW64 420 aaKnown RBP eCLIP0.83□□□□□ -2.28
VPS35-207ENST00000568191 FAM206AQ9NX38 181 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 COMMD9Q9P000 198 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 ARL2BPQ9Y2Y0 163 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 TIMM22Q9Y584 194 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 SNX10Q9Y5X0 201 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 ALG5Q9Y673 324 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 ARL5AQ9Y689 179 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 CHD5Q8TDI0 1954 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 A0A1W2PP64 1363 aa0.83□□□□□ -2.28
VPS35-207ENST00000568191 CCDC144AA2RUR9 1427 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 DOCK5Q9H7D0 1870 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TRAV8-6A0A0B4J262 113 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 A0A1W2PNM2 257 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 GNG14A0A1W2PPG7 69 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 RBFOX3A6NFN3 312 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SMIM9A6NGZ8 99 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 METTL15A6NJ78 407 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 PSMD12O00232 456 aaPredicted RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 ISLRO14498 428 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TCAPO15273 167 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 NDUFS5O43920 106 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 STX10O60499 249 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 CNIH1O95406 144 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SOX14O95416 240 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 IFNA14P01570 189 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 CTSGP08311 255 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 UCHL3P15374 230 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ATF1P18846 271 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 MYL12AP19105 171 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 ALOX5APP20292 161 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TAC1P20366 129 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 CFL1P23528 166 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 PSMB9P28065 219 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 RPL12P30050 165 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 TSPOP30536 169 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 RCVRNP35243 200 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 CD79BP40259 229 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 MAGEA12P43365 314 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 LGALS7P47929 136 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TTPAP49638 278 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SULT1A1P50225 295 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SULT1A2P50226 295 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 TCL1AP56279 114 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 DYNLL1P63167 89 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 S100A12P80511 92 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 RPL19P84098 196 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 PRDX1Q06830 199 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 SMAGPQ0VAQ4 97 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SKP2Q13309 424 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 PPP1R1AQ13522 171 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 KRR1Q13601 381 aaKnown RBP0.82□□□□□ -2.28
VPS35-207ENST00000568191 OR2F1Q13607 317 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 SPA17Q15506 151 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 MAPK14Q16539 360 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 HIST3H3Q16695 136 aa0.82□□□□□ -2.28
VPS35-207ENST00000568191 CLEC12BQ2HXU8 276 aa0.82□□□□□ -2.28
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms