RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 KMT2CQ8NEZ4 4911 aaKnown RBP14.62□□□□□ -0.07
CLN3-218ENST00000565688 HLA-DRB1P01911 266 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 GNAO1P09471 354 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 NKAPLQ5M9Q1 402 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 C6orf141Q5SZD1 244 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 LAIR2Q6ISS4 152 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 ZNF833PQ6ZTB9 187 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 ODF3L1Q8IXM7 274 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 MS4A15Q8N5U1 240 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 OR2AK2Q8NG84 335 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 FBLIM1Q8WUP2 373 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 UBE2E2Q96LR5 201 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 NABP2Q9BQ15 211 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 MRPL20Q9BYC9 149 aaKnown RBP14.62□□□□□ -0.07
CLN3-218ENST00000565688 ABRACLQ9P1F3 81 aa14.62□□□□□ -0.07
CLN3-218ENST00000565688 NBR2O15453 112 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 CHATP28329 748 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 GLT8D1Q68CQ7 371 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 BPIFB6Q8NFQ5 453 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 OR11H1Q8NG94 326 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 PHYHIPQ92561 330 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 RBMXL1Q96E39 390 aaKnown RBP14.61□□□□□ -0.07
CLN3-218ENST00000565688 OR51J1Q9H342 316 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 STEAP1Q9UHE8 339 aa14.61□□□□□ -0.07
CLN3-218ENST00000565688 IGLV1-40P01703 118 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 OR8U8P0C7N1 319 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 PPIFP30405 207 aaKnown RBP14.6□□□□□ -0.07
CLN3-218ENST00000565688 RPS27AP62979 156 aaKnown RBP14.6□□□□□ -0.07
CLN3-218ENST00000565688 RUNX1Q01196 453 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 RCN1Q15293 331 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 HMGN3Q15651 99 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 C5orf64Q2M2E5 130 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 ACSM3Q53FZ2 586 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 FAM71F2Q6NXP2 309 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 KCNG3Q8TAE7 436 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 SULT4A1Q9BR01 284 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 MND1Q9BWT6 205 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 TMEM59Q9BXS4 323 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 ANKRD60Q9BZ19 345 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 FKBP14Q9NWM8 211 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 KIAA1456Q9P272 454 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 SCOCQ9UIL1 159 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 VSIG4Q9Y279 399 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 LSM4Q9Y4Z0 139 aaKnown RBP14.6□□□□□ -0.07
CLN3-218ENST00000565688 WSB1Q9Y6I7 421 aa14.6□□□□□ -0.07
CLN3-218ENST00000565688 SAA2-SAA4A0A096LPE2 208 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 TRAV41A0A0B4J266 112 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 ATP6V0E1O15342 81 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 SAA2P0DJI9 122 aaPredicted RBP14.59□□□□□ -0.07
CLN3-218ENST00000565688 VSIG8P0DPA2 414 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 ECI1P42126 302 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 OR3A3P47888 321 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 INSL3P51460 131 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 GABPB1Q06547 395 aaPredicted RBP14.59□□□□□ -0.07
CLN3-218ENST00000565688 C1orf100Q5SVJ3 147 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 RNLSQ5VYX0 342 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 LIN54Q6MZP7 749 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 ZNF491Q8N8L2 437 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 NPBQ8NG41 125 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 RITA1Q96K30 269 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 FAAP24Q9BTP7 215 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 PARP11Q9NR21 331 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 PIPOXQ9P0Z9 390 aa14.59□□□□□ -0.07
CLN3-218ENST00000565688 IGHV7-81A0A0B4J1V7 117 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 G3V318 75 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 CNTFRP26992 372 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 ZNF616Q08AN1 781 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 ZNF260Q3ZCT1 412 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 RBM48Q5RL73 367 aaKnown RBP14.58□□□□□ -0.08
CLN3-218ENST00000565688 OGFRL1Q5TC84 451 aaPredicted RBP14.58□□□□□ -0.08
CLN3-218ENST00000565688 MOB1BQ7L9L4 216 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 C6orf201Q7Z4U5 140 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 LRRTM1Q86UE6 522 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 OR1N2Q8NGR9 330 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 IL1F10Q8WWZ1 152 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 CYYR1Q96J86 154 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 PRR25Q96S07 402 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 KLK15Q9H2R5 256 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 IFI27L2Q9H2X8 130 aa14.58□□□□□ -0.08
CLN3-218ENST00000565688 STAB2Q8WWQ8 2551 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 I3L521 148 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 RAB29O14966 203 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 NDUFA3O95167 84 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 NAPSAO96009 420 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 SRMP19623 302 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 KIAA0141Q14154 515 aaPredicted RBP14.57□□□□□ -0.08
CLN3-218ENST00000565688 INSL4Q14641 139 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 OR10K2Q6IF99 312 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 C5orf24Q7Z6I8 188 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 SVOPQ8N4V2 548 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 MINDY2Q8NBR6 621 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 TMED9Q9BVK6 235 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 TM2D1Q9BX74 207 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 VCXQ9H320 206 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 GHITMQ9H3K2 345 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 RIMS4Q9H426 269 aaPredicted RBP14.57□□□□□ -0.08
CLN3-218ENST00000565688 GNB4Q9HAV0 340 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 CHMP1AQ9HD42 196 aaPredicted RBP14.57□□□□□ -0.08
CLN3-218ENST00000565688 SLC23A1Q9UHI7 598 aa14.57□□□□□ -0.08
CLN3-218ENST00000565688 ZNF256Q9Y2P7 627 aaPredicted RBP14.57□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms