RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 LY6G6FQ5SQ64 297 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 TMEM91Q6ZNR0 172 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 MOB1BQ7L9L4 216 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 STPG2Q8N412 459 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 Q8N9W7 124 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 OR2AK2Q8NG84 335 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 SETD6Q8TBK2 473 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 CNBD2Q96M20 576 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 NICN1Q9BSH3 213 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 KCNK15Q9H427 330 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 ACOT13Q9NPJ3 140 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 NECAP2Q9NVZ3 263 aa13.31□□□□□ -0.28
CLK3-210ENST00000563112 PRB2P02812 416 aaPredicted RBP13.3□□□□□ -0.28
CLK3-210ENST00000563112 IGLL1P15814 213 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 SLC6A1P30531 599 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 MAP2K4P45985 399 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 PSMD7P51665 324 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 RPL23AP62750 156 aaKnown RBP13.3□□□□□ -0.28
CLK3-210ENST00000563112 QRFPP83859 136 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 HMGN3Q15651 99 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 IL1F10Q8WWZ1 152 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 PHF21AQ96BD5 680 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 RCC1LQ96I51 464 aaKnown RBP13.3□□□□□ -0.28
CLK3-210ENST00000563112 CYYR1Q96J86 154 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 PLSCR3Q9NRY6 295 aa13.3□□□□□ -0.28
CLK3-210ENST00000563112 LINC01548A6NM66 108 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 NUDT19A8MXV4 375 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 DUS4LO95620 317 aaKnown RBP13.29□□□□□ -0.28
CLK3-210ENST00000563112 NAPSAO96009 420 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 CALRP27797 417 aaKnown RBP13.29□□□□□ -0.28
CLK3-210ENST00000563112 SOX6P35712 828 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 LSAMPQ13449 338 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 PNLIPRP3Q17RR3 467 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 TEX38Q6PEX7 206 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 C5orf24Q7Z6I8 188 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 SVOPQ8N4V2 548 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 LPAR5Q9H1C0 372 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 RAB26Q9ULW5 256 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 MGAT4AQ9UM21 535 aa13.29□□□□□ -0.28
CLK3-210ENST00000563112 SOCS1O15524 211 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 F2RL1P55085 397 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 FABP5Q01469 135 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 TBCEQ15813 527 aaPredicted RBP13.28□□□□□ -0.28
CLK3-210ENST00000563112 ZNF880Q6PDB4 577 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 ZNF367Q7RTV3 350 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 FAM89BQ8N5H3 189 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 GFI1Q99684 422 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 HSF4Q9ULV5 492 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 V9GY05 133 aa13.28□□□□□ -0.28
CLK3-210ENST00000563112 A0A0A6YYD4 124 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 TRBV6-6A0A0A6YYG2 114 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 PDCD5O14737 125 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 VEGFCP49767 419 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 MMDQ15546 238 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 CXorf66Q5JRM2 361 aaPredicted RBP13.27□□□□□ -0.29
CLK3-210ENST00000563112 FOXB2Q5VYV0 432 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 ZNF833PQ6ZTB9 187 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 ODF3L1Q8IXM7 274 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 FAM71E2Q8N5Q1 922 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 OR56B1Q8NGI3 324 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 MRAPQ8TCY5 172 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 FAM3DQ96BQ1 224 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 NABP2Q9BQ15 211 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 ZNF251Q9BRH9 671 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 MRPL20Q9BYC9 149 aaKnown RBP13.27□□□□□ -0.29
CLK3-210ENST00000563112 GPR61Q9BZJ8 451 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 GHITMQ9H3K2 345 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 PIPOXQ9P0Z9 390 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 AK3Q9UIJ7 227 aa13.27□□□□□ -0.29
CLK3-210ENST00000563112 VDAC1P21796 283 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 MYCNOSP40205 109 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 OR3A3P47888 321 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 THBS3P49746 956 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 CLDN12P56749 244 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 ACTBP60709 375 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 C2orf76Q3KRA6 126 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 FAM71F2Q6NXP2 309 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 ZNF695Q8IW36 515 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 LINC00482Q8N8I6 264 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 KLHL30-AS1Q8NEE0 82 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 SLC23A1Q9UHI7 598 aa13.26□□□□□ -0.29
CLK3-210ENST00000563112 ZNF107Q9UII5 783 aaPredicted RBP13.26□□□□□ -0.29
CLK3-210ENST00000563112 SAA2-SAA4A0A096LPE2 208 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 RAB29O14966 203 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 HSPA12AO43301 675 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 DENRO43583 198 aaKnown RBP13.25□□□□□ -0.29
CLK3-210ENST00000563112 ELANEP08246 267 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 SAA2P0DJI9 122 aaPredicted RBP13.25□□□□□ -0.29
CLK3-210ENST00000563112 OR5H8P0DN80 308 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 ZBTB25P24278 435 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 MRPS15P82914 257 aaKnown RBP13.25□□□□□ -0.29
CLK3-210ENST00000563112 FOXE3Q13461 319 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 C8orf86Q6ZUL3 223 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 MRPL41Q8IXM3 137 aaKnown RBP13.25□□□□□ -0.29
CLK3-210ENST00000563112 EDARADDQ8WWZ3 215 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 DPF1Q92782 380 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 ARHGAP5-AS1Q96IT6 56 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 CMSS1Q9BQ75 279 aaKnown RBP13.25□□□□□ -0.29
CLK3-210ENST00000563112 CHCHD6Q9BRQ6 235 aa13.25□□□□□ -0.29
CLK3-210ENST00000563112 PECRQ9BY49 303 aa13.25□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 75.8 ms