RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 PLCXD1Q9NUJ7 323 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 KCNIP1Q9NZI2 227 aa14.84□□□□□ -0.03
VPS35-202ENST00000561713 ZNF107Q9UII5 783 aaPredicted RBP14.84□□□□□ -0.03
VPS35-202ENST00000561713 SAA2-SAA4A0A096LPE2 208 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 SAA2P0DJI9 122 aaPredicted RBP14.83□□□□□ -0.04
VPS35-202ENST00000561713 UNC119Q13432 240 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 ACSM3Q53FZ2 586 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 CDH26Q8IXH8 852 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 KCTD7Q96MP8 289 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 TMEM59Q9BXS4 323 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 PARP12Q9H0J9 701 aaKnown RBP14.83□□□□□ -0.04
VPS35-202ENST00000561713 CST11Q9H112 138 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 PARP11Q9NR21 331 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 JPT1Q9UK76 154 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 ERGIC3Q9Y282 383 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 WSB1Q9Y6I7 421 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 LYSTQ99698 3801 aa14.83□□□□□ -0.04
VPS35-202ENST00000561713 A0A0A6YYD4 124 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 G3V318 75 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 CASQ2O14958 399 aaPredicted RBP14.82□□□□□ -0.04
VPS35-202ENST00000561713 ATP6V0E1O15342 81 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 ST8SIA5O15466 376 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 CA11O75493 328 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 CD1AP06126 327 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 CDK1P06493 297 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 ACTBP60709 375 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 OR8H1Q8NGG4 311 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 OR8U1Q8NH10 309 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 SETD6Q8TBK2 473 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 IL1F10Q8WWZ1 152 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 NABP2Q9BQ15 211 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 FAAP24Q9BTP7 215 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 MND1Q9BWT6 205 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 IFI27L2Q9H2X8 130 aa14.82□□□□□ -0.04
VPS35-202ENST00000561713 LSM2Q9Y333 95 aaKnown RBP14.82□□□□□ -0.04
VPS35-202ENST00000561713 PTGES3LE9PB15 166 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 IGHG4P01861 327 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 ELANEP08246 267 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 HTR2CP28335 458 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 RPS27AP62979 156 aaKnown RBP14.81□□□□□ -0.04
VPS35-202ENST00000561713 NDPQ00604 133 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 HMGN3Q15651 99 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 SVOPQ8N4V2 548 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 RNF152Q8N8N0 203 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 NEDD4LQ96PU5 975 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 OR5B12Q96R08 314 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 HDHD3Q9BSH5 251 aaPredicted RBP14.81□□□□□ -0.04
VPS35-202ENST00000561713 GNB4Q9HAV0 340 aa14.81□□□□□ -0.04
VPS35-202ENST00000561713 GLAP06280 429 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 PSMB8P28062 276 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 BLVRBP30043 206 aaPredicted RBP14.8□□□□□ -0.04
VPS35-202ENST00000561713 P2RY14Q15391 338 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 FAM131AQ6UXB0 335 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 GLDNQ6ZMI3 551 aaPredicted RBP14.8□□□□□ -0.04
VPS35-202ENST00000561713 ZNF833PQ6ZTB9 187 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 OR2AK2Q8NG84 335 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 THRSPQ92748 146 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 GON7Q9BXV9 100 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 KLK15Q9H2R5 256 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 CHMP1AQ9HD42 196 aaPredicted RBP14.8□□□□□ -0.04
VPS35-202ENST00000561713 SORL1Q92673 2214 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 BIRC6Q9NR09 4857 aa14.8□□□□□ -0.04
VPS35-202ENST00000561713 NBR2O15453 112 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 IGF1P05019 195 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 ECI1P42126 302 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 CDX1P47902 265 aaPredicted RBP14.79□□□□□ -0.04
VPS35-202ENST00000561713 MED22Q15528 200 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 HSD17B12Q53GQ0 312 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 RPL39P5Q59GN2 51 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 LIPKQ5VXJ0 399 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 GLT8D1Q68CQ7 371 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 CEACAM19Q7Z692 300 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 OR5M8Q8NGP6 311 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 C4orf3Q8WVX3 66 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 TMEM203Q969S6 136 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 GALMQ96C23 342 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 GFI1Q99684 422 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 ZNF251Q9BRH9 671 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 ANKRD60Q9BZ19 345 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 GHRLQ9UBU3 117 aa14.79□□□□□ -0.04
VPS35-202ENST00000561713 NKX1-2Q9UD57 310 aaPredicted RBP14.79□□□□□ -0.04
VPS35-202ENST00000561713 IGHV7-81A0A0B4J1V7 117 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 SEC14L6B5MCN3 397 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 YPEL1O60688 119 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 UBBP0CG47 229 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 AQP4P55087 323 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 RPS25P62851 125 aaKnown RBP14.78□□□□□ -0.04
VPS35-202ENST00000561713 HTD2P86397 168 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 KIR2DS1Q14954 304 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 SPHARQ15513 63 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 ECSCRQ19T08 205 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 C1orf100Q5SVJ3 147 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 CASC10Q5T4H9 136 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 ASPHD1Q5U4P2 390 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 STEAP3Q658P3 488 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 ZNF554Q86TJ5 538 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 CASTOR1Q8WTX7 329 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 YPEL2Q96QA6 119 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 VCXQ9H320 206 aa14.78□□□□□ -0.04
VPS35-202ENST00000561713 SCOCQ9UIL1 159 aa14.78□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms