RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 HLA-GP17693 338 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 DNASE1P24855 282 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 RND3P61587 244 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 TMEM187Q14656 261 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 BVESQ8NE79 360 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 KAAG1Q9UBP8 84 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 CLN8Q9UBY8 286 aa17.6■□□□□ 0.41
CLN3-209ENST00000561689 C5orf51A6NDU8 294 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 NDUFS7O75251 213 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 IGHV3-7P01780 117 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 HOXB5P09067 269 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 RPL31P62899 125 aaKnown RBP17.59■□□□□ 0.41
CLN3-209ENST00000561689 GLYATL2Q8WU03 294 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 H1FXQ92522 213 aaKnown RBP17.59■□□□□ 0.41
CLN3-209ENST00000561689 SPOCK3Q9BQ16 436 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 TOLLIPQ9H0E2 274 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 hADV38S2A0JD32 116 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 MPTX1A8MV57 137 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 LOXL3P58215 753 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 METTL8Q9H825 291 aaKnown RBP17.59■□□□□ 0.41
CLN3-209ENST00000561689 RAB18Q9NP72 206 aa17.59■□□□□ 0.41
CLN3-209ENST00000561689 F2RL2O00254 374 aa17.58■□□□□ 0.4
CLN3-209ENST00000561689 PPIHO43447 177 aaKnown RBP17.58■□□□□ 0.4
CLN3-209ENST00000561689 TSC22D2O75157 780 aa17.58■□□□□ 0.4
CLN3-209ENST00000561689 MRPS11P82912 194 aaKnown RBP17.58■□□□□ 0.4
CLN3-209ENST00000561689 UTF1Q5T230 341 aa17.58■□□□□ 0.4
CLN3-209ENST00000561689 CORO2AQ92828 525 aa17.58■□□□□ 0.4
CLN3-209ENST00000561689 SUCNR1Q9BXA5 334 aa17.58■□□□□ 0.4
CLN3-209ENST00000561689 OR2D2Q9H210 308 aa17.58■□□□□ 0.4
CLN3-209ENST00000561689 USF3Q68DE3 2245 aa17.58■□□□□ 0.4
CLN3-209ENST00000561689 ZNF273Q14593 569 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 DRAM1Q8N682 238 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 OR51H1Q8NH63 302 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 MSI2Q96DH6 328 aaKnown RBP17.57■□□□□ 0.4
CLN3-209ENST00000561689 JPT1Q9UK76 154 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 LRRK2Q5S007 2527 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 A1L4Q6 167 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 ST8SIA5O15466 376 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 MORN2Q502X0 79 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 TMEM200BQ69YZ2 307 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 GSG1LQ6UXU4 331 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 LIAT1Q6ZQX7 453 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 LEAP2Q969E1 77 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 PSG11Q9UQ72 335 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 UBE2J1Q9Y385 318 aaPredicted RBP17.57■□□□□ 0.4
CLN3-209ENST00000561689 LINC00312Q9Y6C7 94 aa17.57■□□□□ 0.4
CLN3-209ENST00000561689 ZNF729A6NN14 1252 aaPredicted RBP17.56■□□□□ 0.4
CLN3-209ENST00000561689 FSTL3O95633 263 aa17.56■□□□□ 0.4
CLN3-209ENST00000561689 S100GP29377 79 aa17.56■□□□□ 0.4
CLN3-209ENST00000561689 ERVFRD-1P60508 538 aa17.56■□□□□ 0.4
CLN3-209ENST00000561689 MEF2CQ06413 473 aaPredicted RBP17.56■□□□□ 0.4
CLN3-209ENST00000561689 LGALSLQ3ZCW2 172 aaPredicted RBP17.56■□□□□ 0.4
CLN3-209ENST00000561689 LHFPL5Q8TAF8 219 aa17.56■□□□□ 0.4
CLN3-209ENST00000561689 AKR1E2Q96JD6 320 aa17.56■□□□□ 0.4
CLN3-209ENST00000561689 PLEKHF2Q9H8W4 249 aa17.56■□□□□ 0.4
CLN3-209ENST00000561689 MMP23AO75900 390 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 F12P00748 615 aaPredicted RBP17.55■□□□□ 0.4
CLN3-209ENST00000561689 NFYBP25208 207 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 ZNF645Q8N7E2 425 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 RAB1CQ92928 201 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 TIMD4Q96H15 378 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 ABHD14BQ96IU4 210 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 OR10C1Q96KK4 312 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 TMEM222Q9H0R3 208 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 CHODLQ9H9P2 273 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 AKAP6Q13023 2319 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 YPEL1O60688 119 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 GOSR1O95249 250 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 CLDN1O95832 211 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 CCL3L1P16619 93 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 F2RP25116 425 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 SSTR2P30874 369 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 TLE4Q04727 773 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 SRSF4Q08170 494 aaKnown RBP17.55■□□□□ 0.4
CLN3-209ENST00000561689 LRRC37A5PQ49AS3 106 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 PRAMEF5Q5TYX0 476 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 LYZL2Q7Z4W2 148 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 LGI3Q8N145 548 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 ASB13Q8WXK3 278 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 C5orf30Q96GV9 206 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 YPEL2Q96QA6 119 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 AGMATQ9BSE5 352 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 RAB9BQ9NP90 201 aa17.55■□□□□ 0.4
CLN3-209ENST00000561689 FAM208BQ5VWN6 2430 aa17.54■□□□□ 0.4
CLN3-209ENST00000561689 ZNF134P52741 427 aa17.54■□□□□ 0.4
CLN3-209ENST00000561689 LINC00574Q9H8X3 128 aa17.54■□□□□ 0.4
CLN3-209ENST00000561689 GFOD1Q9NXC2 390 aa17.54■□□□□ 0.4
CLN3-209ENST00000561689 IDI2-AS1Q9NZ38 188 aa17.54■□□□□ 0.4
CLN3-209ENST00000561689 HTR2BP41595 481 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 TMEM268Q5VZI3 342 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 GGNBP1Q5YKI7 109 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 ZNF841Q6ZN19 808 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 LRTM2Q8N967 370 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 EDARADDQ8WWZ3 215 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 C18orf12Q96KH6 178 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 HEXA-AS1Q9H8Q6 139 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 TAS2R3Q9NYW6 316 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 H0Y980 276 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 RGS11O94810 467 aa17.53■□□□□ 0.4
CLN3-209ENST00000561689 ZNF16P17020 682 aaPredicted RBP17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms