RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 MYF6P23409 242 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 BLVRBP30043 206 aaPredicted RBP12.67□□□□□ -0.38
CLN3-208ENST00000561505 NDPQ00604 133 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 C6orf141Q5SZD1 244 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 ZNF660Q6AZW8 331 aaPredicted RBP12.67□□□□□ -0.38
CLN3-208ENST00000561505 ZFP1Q6P2D0 407 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 CD200R1LQ6Q8B3 271 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 Q8N1Y9 231 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 Q96M66 194 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 ZNF251Q9BRH9 671 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 OR2S2Q9NQN1 319 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 FBXO7Q9Y3I1 522 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 PEX16Q9Y5Y5 336 aa12.67□□□□□ -0.38
CLN3-208ENST00000561505 STARD9Q9P2P6 4700 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 LINC01619G3V211 115 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 LY86O95711 162 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 LGALS1P09382 135 aaKnown RBP12.66□□□□□ -0.38
CLN3-208ENST00000561505 GNMTQ14749 295 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 Q499Y3 187 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 YIF1BQ5BJH7 314 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 OR2G6Q5TZ20 316 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 FAM71F2Q6NXP2 309 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 TCTEX1D1Q8N7M0 179 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 OR13C5Q8NGS8 318 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 MRPL30Q8TCC3 161 aaKnown RBP12.66□□□□□ -0.38
CLN3-208ENST00000561505 GHSRQ92847 366 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 PGLYRP3Q96LB9 341 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 OR14A2Q96R54 314 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 ABHD14AQ9BUJ0 271 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 MRPL20Q9BYC9 149 aaKnown RBP12.66□□□□□ -0.38
CLN3-208ENST00000561505 CST11Q9H112 138 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 EDA2RQ9HAV5 297 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 C19orf73Q9NVV2 129 aa12.66□□□□□ -0.38
CLN3-208ENST00000561505 MRPS28Q9Y2Q9 187 aaKnown RBP12.66□□□□□ -0.38
CLN3-208ENST00000561505 TRIM64CA6NLI5 447 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 ARPC1BO15143 372 aaKnown RBP12.65□□□□□ -0.38
CLN3-208ENST00000561505 SAP30O75446 220 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 CIB2O75838 187 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 SMN1Q16637 294 aaKnown RBP12.65□□□□□ -0.38
CLN3-208ENST00000561505 GLIPR1L1Q6UWM5 242 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 TMPRSS11AQ6ZMR5 421 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 OVCH2Q7RTZ1 564 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 OR52L2PQ8NGH6 319 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 OR6Q1Q8NGQ2 317 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 CYYR1Q96J86 154 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 OR5B12Q96R08 314 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 C9orf16Q9BUW7 83 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 ALX4Q9H161 411 aaPredicted RBP12.65□□□□□ -0.38
CLN3-208ENST00000561505 PARP11Q9NR21 331 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 DIMT1Q9UNQ2 313 aaKnown RBP12.65□□□□□ -0.38
CLN3-208ENST00000561505 LRRC42Q9Y546 428 aa12.65□□□□□ -0.38
CLN3-208ENST00000561505 IGHV4OR15-8A0A075B7B6 117 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 A0A087WW49 117 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 OR8U9P0C7N5 309 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 MGMTP16455 207 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 SLURP1P55000 103 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 CX3CL1P78423 397 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 C5orf24Q7Z6I8 188 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 MUL1Q969V5 352 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 RHOVQ96L33 236 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 IFI27L2Q9H2X8 130 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 GHITMQ9H3K2 345 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 ZMAT4Q9H898 229 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 FOXA2Q9Y261 457 aaPredicted RBP12.64□□□□□ -0.39
CLN3-208ENST00000561505 ERGIC3Q9Y282 383 aa12.64□□□□□ -0.39
CLN3-208ENST00000561505 RRHO14718 337 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 IGLV1-51P01701 117 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 PPP1CCP36873 323 aaKnown RBP12.63□□□□□ -0.39
CLN3-208ENST00000561505 VEGFCP49767 419 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 HMGN3Q15651 99 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 AKIRIN2Q53H80 203 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 PYHIN1Q6K0P9 492 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 PRR18Q8N4B5 295 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 RNF5Q99942 180 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 KCNIP1Q9NZI2 227 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 CKLFQ9UBR5 152 aa12.63□□□□□ -0.39
CLN3-208ENST00000561505 SAA2-SAA4A0A096LPE2 208 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 ITGB1BP1O14713 200 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 LDLRAD4O15165 306 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 PDCD6O75340 191 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 RGS11O94810 467 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 HSPB1P04792 205 aaKnown RBP12.62□□□□□ -0.39
CLN3-208ENST00000561505 CD1AP06126 327 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 SAA2P0DJI9 122 aaPredicted RBP12.62□□□□□ -0.39
CLN3-208ENST00000561505 OR3A3P47888 321 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 ZNF880Q6PDB4 577 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 ARPC1AQ92747 370 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 AGMATQ9BSE5 352 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 SELENOIQ9C0D9 397 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 BANF2Q9H503 90 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 GHRLQ9UBU3 117 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 CLEC2DQ9UHP7 191 aa12.62□□□□□ -0.39
CLN3-208ENST00000561505 EXOSC1Q9Y3B2 195 aaKnown RBP12.62□□□□□ -0.39
CLN3-208ENST00000561505 A0A1W2PN81 502 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 IRGMA1A4Y4 181 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 UBE2QL1A1L167 161 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 FCN1O00602 326 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 HSPA12AO43301 675 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 MAS1P04201 325 aa12.61□□□□□ -0.39
CLN3-208ENST00000561505 CT45A6P0DMU7 189 aa12.61□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms