RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 NHLRC1Q6VVB1 395 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SLC35G3Q8N808 338 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF709Q8N972 641 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 SNX22Q96L94 193 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 PKIBQ9C010 78 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 MFFQ9GZY8 342 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 LINC00527Q9UJ94 153 aa4.57□□□□□ -1.68
VPS13C-209ENST00000560637 A0A0A6YYD4 124 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 LOC390937A0A1W2PQ73 354 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 CRYBA1P05813 215 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 PGA5P0DJD9 388 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM11P17152 192 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 AKR1C1Q04828 323 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 DHRS2Q13268 280 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 TNXAQ16473 311 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 ECSCRQ19T08 205 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 LPCAT3Q6P1A2 487 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 TBC1D26Q86UD7 250 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF546Q86UE3 836 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 MUC20Q8N307 709 aaPredicted RBP4.56□□□□□ -1.68
VPS13C-209ENST00000560637 SCGB1C1Q8TD33 95 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 SPIN2AQ99865 258 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 SPIN2BQ9BPZ2 258 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 SHARPINQ9H0F6 387 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 HEXA-AS1Q9H8Q6 139 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 C19orf12Q9NSK7 152 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 ARPC4-TTLL3A0A0A6YYG9 625 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 TRAV24A0A0B4J272 114 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 SH2D7A6NKC9 451 aaPredicted RBP4.56□□□□□ -1.68
VPS13C-209ENST00000560637 P2RX3P56373 397 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 MSMO1Q15800 293 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 Q5PR19 223 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 WDR86Q86TI4 376 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 CDH24Q86UP0 819 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 CADM3Q8N126 398 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 GPX8Q8TED1 209 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 ZFAND2BQ8WV99 257 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 HARBI1Q96MB7 349 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 Q96MF0 132 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 OR5B12Q96R08 314 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 PBDC1Q9BVG4 233 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 SLC2A9Q9NRM0 540 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 CACNG5Q9UF02 275 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 S4R3C0 116 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 OR5H14A6NHG9 310 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 RNF212BA8MTL3 300 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 TSPAN4O14817 238 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 EREGO14944 169 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 IGFBP3P17936 291 aaPredicted RBP4.56□□□□□ -1.68
VPS13C-209ENST00000560637 NKX2-1P43699 371 aaPredicted RBP4.56□□□□□ -1.68
VPS13C-209ENST00000560637 PRRX1P54821 245 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF273Q14593 569 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 CD177Q8N6Q3 437 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM229BQ8NBD8 167 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 POC1AQ8NBT0 407 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 OR5T1Q8NG75 326 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 NUDT16L1Q9BRJ7 211 aaKnown RBP4.56□□□□□ -1.68
VPS13C-209ENST00000560637 ABHD14AQ9BUJ0 271 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 RASL12Q9NYN1 266 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF835Q9Y2P0 537 aa4.56□□□□□ -1.68
VPS13C-209ENST00000560637 SETXQ7Z333 2677 aaKnown RBP4.55□□□□□ -1.68
VPS13C-209ENST00000560637 NBEAQ8NFP9 2946 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 SHISA9B4DS77 424 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 LIPFP07098 398 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 GZMKP49863 264 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 EFNA4P52798 201 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ASAH1Q13510 395 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ATPAF1Q5TC12 328 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ZBTB37Q5TC79 503 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 LYZL2Q7Z4W2 148 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ARRDC1Q8N5I2 433 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 OR5M8Q8NGP6 311 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 NEU4Q8WWR8 484 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ACY3Q96HD9 319 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 NRIP2Q9BQI9 281 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 C7orf50Q9BRJ6 194 aaKnown RBP4.55□□□□□ -1.68
VPS13C-209ENST00000560637 HIF1ANQ9NWT6 349 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 MIOXQ9UGB7 285 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 SELENOKQ9Y6D0 94 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ANKRD20A5PA0PJZ0 165 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM178BH3BS89 294 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 K7N7A8 449 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 SLC25A17O43808 307 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ATG12O94817 140 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 TOX4O94842 621 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 IFNA5P01569 189 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 RNF224P0DH78 156 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 MUC1P15941 1255 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-209ENST00000560637 TMEM33P57088 247 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 IL13RA2Q14627 380 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 C11orf91Q3C1V1 193 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 SSX8Q7RTT4 187 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 DMRTC2Q8IXT2 367 aaPredicted RBP4.55□□□□□ -1.68
VPS13C-209ENST00000560637 C1orf174Q8IYL3 243 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 BVESQ8NE79 360 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 ZNF75AQ96N20 296 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 RPH3ALQ9UNE2 315 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 OR2W1Q9Y3N9 320 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 PLXNB1O43157 2135 aa4.55□□□□□ -1.68
VPS13C-209ENST00000560637 C3orf85A0A1B0GTC6 90 aa4.54□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 62.2 ms