RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 BET1O15155 118 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 SSX2Q16385 188 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 TPTE2P1Q5T6R2 138 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 BEST4Q8NFU0 473 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 ZDHHC16Q969W1 377 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 MALSU1Q96EH3 234 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 DUX5Q96PT3 197 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 SOSTQ9BQB4 213 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 ABHD14AQ9BUJ0 271 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 IFI27L2Q9H2X8 130 aa17.59■□□□□ 0.41
SNX1-210ENST00000560260 DNAJC9-AS1A6NH13 148 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 HOXA3O43365 443 aaPredicted RBP17.58■□□□□ 0.4
SNX1-210ENST00000560260 IGHV4-59P01825 116 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 LPLP06858 475 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 CEACAM6P40199 344 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 CBX5P45973 191 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 OR10X1Q8NGY0 326 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 TOLLIPQ9H0E2 274 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 MEGF9Q9H1U4 602 aa17.58■□□□□ 0.4
SNX1-210ENST00000560260 LEUTXA8MZ59 168 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 ST8SIA5O15466 376 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 HSPA12AO43301 675 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 TCF21O43680 179 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 DIRAS3O95661 229 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 ZBTB25P24278 435 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 BAMBIQ13145 260 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 ODF3L1Q8IXM7 274 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 OR52I2Q8NH67 350 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 ST6GALNAC6Q969X2 333 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 SCPEP1Q9HB40 452 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 RDH8Q9NYR8 311 aa17.57■□□□□ 0.4
SNX1-210ENST00000560260 AMMECR1Q9Y4X0 333 aaPredicted RBP17.57■□□□□ 0.4
SNX1-210ENST00000560260 C2CD3Q4AC94 2353 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 RGS11O94810 467 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 TPPPO94811 219 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 NAT1P18440 290 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 IER3P46695 156 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 DGCR2P98153 550 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 SLC9A3R2Q15599 337 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 CNPY1Q3B7I2 92 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 RBMS3Q6XE24 437 aaKnown RBP17.56■□□□□ 0.4
SNX1-210ENST00000560260 OR6Q1Q8NGQ2 317 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 PIFOQ8TCI5 191 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 C11orf54Q9H0W9 315 aaPredicted RBP17.56■□□□□ 0.4
SNX1-210ENST00000560260 IFT46Q9NQC8 304 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 V9GYH0 126 aa17.56■□□□□ 0.4
SNX1-210ENST00000560260 SULT1C2O00338 296 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 IFNA2P01563 188 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 ZNF137PP52743 207 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 FBLN7Q53RD9 439 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 H1FOOQ8IZA3 346 aaPredicted RBP17.55■□□□□ 0.4
SNX1-210ENST00000560260 LYG1Q8N1E2 194 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 OR2AK2Q8NG84 335 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 TOMM40LQ969M1 308 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 AGMATQ9BSE5 352 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 BATF3Q9NR55 127 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 TNFRSF19Q9NS68 423 aa17.55■□□□□ 0.4
SNX1-210ENST00000560260 A0A1W2PPI3 338 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 ITGB1BP1O14713 200 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 HSD17B6O14756 317 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 REG1BP48304 166 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 UBA52P62987 128 aaKnown RBP17.54■□□□□ 0.4
SNX1-210ENST00000560260 IL18Q14116 193 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 LRRC75BQ2VPJ9 315 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 PYHIN1Q6K0P9 492 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 CCDC190Q86UF4 302 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 OR10J5Q8NHC4 309 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 RPEQ96AT9 228 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 SSX3Q99909 188 aa17.54■□□□□ 0.4
SNX1-210ENST00000560260 A0A0A6YYJ9 748 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 VGLL3A8MV65 326 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 H3BUX3 64 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 CEACAM3P40198 252 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 OR3A3P47888 321 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 RAB13P51153 203 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 ZNF816Q0VGE8 651 aaPredicted RBP17.53■□□□□ 0.4
SNX1-210ENST00000560260 LYSMD2Q8IV50 215 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 SSMEM1Q8WWF3 244 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 CREB3L1Q96BA8 519 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 C5orf30Q96GV9 206 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 ABHD14BQ96IU4 210 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 ZNF251Q9BRH9 671 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 GINS4Q9BRT9 223 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 KLK11Q9UBX7 282 aa17.53■□□□□ 0.4
SNX1-210ENST00000560260 SAA2-SAA4A0A096LPE2 208 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 FABP12A6NFH5 140 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 OOSP1A8MZH6 123 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 SAA2P0DJI9 122 aaPredicted RBP17.52■□□□□ 0.4
SNX1-210ENST00000560260 NFYAP23511 347 aaPredicted RBP17.52■□□□□ 0.4
SNX1-210ENST00000560260 S100A5P33763 92 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 RCVRNP35243 200 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 RIPPLY3P57055 190 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 ARPC4P59998 168 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 ZNF79Q15937 498 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 AANATQ16613 207 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 OR5AP2Q8NGF4 316 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 SMIM4Q8WVI0 70 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 RTN4IP1Q8WWV3 396 aaPredicted RBP17.52■□□□□ 0.4
SNX1-210ENST00000560260 EDARADDQ8WWZ3 215 aa17.52■□□□□ 0.4
SNX1-210ENST00000560260 CFHR4Q92496 578 aa17.52■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms