RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 GSTT2BP0CG30 244 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 BRS3P32247 399 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 PPP1CCP36873 323 aaKnown RBP8.18□□□□□ -1.1
USP3-216ENST00000559873 CEACAM6P40199 344 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 RIPPLY3P57055 190 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 HILS1P60008 231 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 SSBP1Q04837 148 aaKnown RBP8.18□□□□□ -1.1
USP3-216ENST00000559873 BAMBIQ13145 260 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 LRRC75BQ2VPJ9 315 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 DEFB112Q30KQ8 113 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 MORN2Q502X0 79 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 ACTBL2Q562R1 376 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 TPTE2P1Q5T6R2 138 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 FAM131AQ6UXB0 335 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 SLC25A48Q6ZT89 311 aaKnown RBP8.18□□□□□ -1.1
USP3-216ENST00000559873 BCL6BQ8N143 479 aaPredicted RBP8.18□□□□□ -1.1
USP3-216ENST00000559873 ZNF439Q8NDP4 499 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 OR5R1Q8NH85 324 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 GPX8Q8TED1 209 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 FCAMRQ8WWV6 532 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 LEAP2Q969E1 77 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 DPAGT1Q9H3H5 408 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 NECAP2Q9NVZ3 263 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 PIPOXQ9P0Z9 390 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 ZNRD1Q9P1U0 126 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 POMT1Q9Y6A1 747 aa8.18□□□□□ -1.1
USP3-216ENST00000559873 MEIS3P1A6NDR6 274 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 FABP12A6NFH5 140 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 GABARAPH6UMI1 98 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 CTDSPLO15194 276 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 IGHV3-7P01780 117 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 PTHLHP12272 177 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 TBPP20226 339 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 PTBP1P26599 531 aaKnown RBP eCLIP8.17□□□□□ -1.14e-8■■■■■ 64.1
USP3-216ENST00000559873 TNFSF8P32971 234 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 OR3A3P47888 321 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 ZNF137PP52743 207 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 GNMTQ14749 295 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 HERPUD1Q15011 391 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 SSX2Q16385 188 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 FAM71F2Q6NXP2 309 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 LHFPL4Q7Z7J7 247 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 OR8H3Q8N146 312 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 LYG1Q8N1E2 194 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 OR5AP2Q8NGF4 316 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 OR5H2Q8NGV7 314 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 SMIM4Q8WVI0 70 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 GCDHQ92947 438 aaPredicted RBP8.17□□□□□ -1.1
USP3-216ENST00000559873 S1PR3Q99500 378 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 TOLLIPQ9H0E2 274 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 PRDM13Q9H4Q3 707 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 RDH8Q9NYR8 311 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 TAS2R8Q9NYW2 309 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 OR1A1Q9P1Q5 309 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 ANAPC10Q9UM13 185 aa8.17□□□□□ -1.1
USP3-216ENST00000559873 RBM7Q9Y580 266 aaKnown RBP8.17□□□□□ -1.1
USP3-216ENST00000559873 IGKV1-6A0A0C4DH72 117 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 MDFIC2A0A1B0GVS7 189 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 A0A1W2PPE3 182 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 VGLL3A8MV65 326 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 CLDN34H7C241 214 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 TRIM77I1YAP6 450 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 RAB29O14966 203 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 RBBP9O75884 186 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 GAPDHP04406 335 aaKnown RBP8.16□□□□□ -1.1
USP3-216ENST00000559873 NAT1P18440 290 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 DYNLT3P51808 116 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 CDK10Q15131 360 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 TUSC1Q2TAM9 212 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 IGSF11Q5DX21 431 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 CT45A1Q5HYN5 189 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 Q6YL49 198 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 LIAT1Q6ZQX7 453 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 LINC00299Q6ZSB3 139 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 TGIF2LXQ8IUE1 241 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 GVQW1Q8N7I0 195 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 CT45A3Q8NHU0 189 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 ABHD1Q96SE0 405 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 MEGF9Q9H1U4 602 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 IFI27L2Q9H2X8 130 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 RAB18Q9NP72 206 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 PTTG2Q9NZH5 202 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 ZNF107Q9UII5 783 aaPredicted RBP8.16□□□□□ -1.1
USP3-216ENST00000559873 ZNF221Q9UK13 617 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 PITPNC1Q9UKF7 332 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 HILPDAQ9Y5L2 63 aa8.16□□□□□ -1.1
USP3-216ENST00000559873 IGKV1D-8A0A087WSZ0 117 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 DNAJC9-AS1A6NH13 148 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 ZNF736B4DX44 427 aaPredicted RBP8.15□□□□□ -1.1
USP3-216ENST00000559873 H3BUX3 64 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 SLC31A2O15432 143 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 ST8SIA5O15466 376 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 HOXA3O43365 443 aaPredicted RBP8.15□□□□□ -1.1
USP3-216ENST00000559873 SLC22A5O76082 557 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 CSF1P09603 554 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 GPR12P47775 334 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 TAS2R19P59542 299 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 ZNF816Q0VGE8 651 aaPredicted RBP8.15□□□□□ -1.1
USP3-216ENST00000559873 CNPY1Q3B7I2 92 aa8.15□□□□□ -1.1
USP3-216ENST00000559873 RNASE12Q5GAN4 147 aaKnown RBP8.15□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms