RNA–Protein interactions for RNA: ENST00000558528.1

LDLR-209, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 456 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-209ENST00000558528 IFT46Q9NQC8 304 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 TREM2Q9NZC2 230 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 SCP2D1Q9UJQ7 156 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 RBMX2Q9Y388 322 aaKnown RBP4.27□□□□□ -1.73
LDLR-209ENST00000558528 NPTNQ9Y639 398 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 CACNG2Q9Y698 323 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 EML6Q6ZMW3 1958 aa4.27□□□□□ -1.73
LDLR-209ENST00000558528 VPS13CQ709C8 3753 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 MEGF8Q7Z7M0 2845 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 IGKV1-27A0A075B6S5 117 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 PIGBOS1A0A0B4J2F0 54 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ANKRD20A5PA0PJZ0 165 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 NKX2-6A6NCS4 301 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ZNF736B4DX44 427 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 LGALS8O00214 317 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 CDIPTO14735 213 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 DEGS1O15121 323 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 NDUFA2O43678 99 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ANGPTL7O43827 346 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 PDCD6O75340 191 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 OR7C1O76099 320 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 DHFRP00374 187 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 PGA5P0DJD9 388 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 PRKACAP17612 351 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 GLRA1P23415 457 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 GABRR1P24046 479 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 FCGR2BP31994 310 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 CCKARP32238 428 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 EFNB2P52799 333 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ERVS71-1P61550 626 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 SEC61A1P61619 476 aaKnown RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 CX3CL1P78423 397 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 FOXI1Q12951 378 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ZNF154Q13106 437 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 UNC119Q13432 240 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 OXA1LQ15070 435 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ZNF146Q15072 292 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 GRK1Q15835 563 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 TAF9Q16594 264 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 SMIM21Q3B7S5 101 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ANKRD55Q3KP44 614 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ZNF672Q499Z4 452 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 ATAD3CQ5T2N8 411 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 NCR3LG1Q68D85 454 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 OR4A47Q6IF82 309 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 NCCRP1Q6ZVX7 275 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 C1QL2Q7Z5L3 287 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 CALHM1Q8IU99 346 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 CENPSQ8N2Z9 138 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 MUC15Q8N387 334 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 ACBD4Q8NC06 268 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 TMEM104Q8NE00 496 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 DUSP18Q8NEJ0 188 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 OR5D13Q8NGL4 314 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 OR5R1Q8NH85 324 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 YIPF5Q969M3 257 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 SEH1LQ96EE3 360 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 C1orf147Q96MC9 270 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 SDHCQ99643 169 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 PRRT1Q99946 306 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 CMSS1Q9BQ75 279 aaKnown RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 SLC25A21Q9BQT8 299 aaPredicted RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 TMEM204Q9BSN7 226 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 PECRQ9BY49 303 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 MRPL37Q9BZE1 423 aaKnown RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 DYNLRB1Q9NP97 96 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 MTCH1Q9NZJ7 389 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 C1RLQ9NZP8 487 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 MYEF2Q9P2K5 600 aaKnown RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 RNF7Q9UBF6 113 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 RNF114Q9Y508 228 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 NUBP2Q9Y5Y2 271 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 FLNAP21333 2647 aaKnown RBP4.26□□□□□ -1.73
LDLR-209ENST00000558528 PKDREJQ9NTG1 2253 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 TGP01266 2768 aa4.26□□□□□ -1.73
LDLR-209ENST00000558528 TRAV38-1A0A0B4J264 116 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 IGKV1-12A0A0C4DH73 117 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 KIR2DS1A0A191URI9 304 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ZSCAN5BA6NJL1 495 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 PCP4L1A6NKN8 68 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 A6NNC1 897 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 SHISA9B4DS77 424 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 F5H5P2 479 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MFNGO00587 321 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 GEMIN2O14893 280 aaKnown RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 TIMM23O14925 209 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 SOCS1O15524 211 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MLNRO43193 412 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 SPRY3O43610 288 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 LANCL1O43813 399 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ZG16O60844 167 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 FSTL3O95633 263 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 RAB3DO95716 219 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 IGKV1D-12P01611 117 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 FCER2P06734 321 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 ZNF44P15621 663 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 MUC1P15941 1255 aaPredicted RBP4.25□□□□□ -1.73
LDLR-209ENST00000558528 GNB3P16520 340 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 BCL3P20749 454 aa4.25□□□□□ -1.73
LDLR-209ENST00000558528 LMO1P25800 156 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 60.4 ms