RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-223ENST00000557005 S100A7P31151 101 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 PCP4P48539 62 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 MEOX1P50221 254 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SUCLG1P53597 346 aaKnown RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 GNG3P63215 75 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 IGFBP7Q16270 282 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 CHCHD2P9Q5T1J5 151 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 MOB1BQ7L9L4 216 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 CISD2Q8N5K1 135 aaKnown RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 KLHDC3Q9BQ90 382 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 QTRT1Q9BXR0 403 aaKnown RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 PARLQ9H300 379 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 FOXJ2Q9P0K8 574 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF391Q9UJN7 358 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 WASHC3Q9Y3C0 194 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 LOXL2Q9Y4K0 774 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 A0A087WWC5 75 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 A0A1B0GTQ1 180 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF891A8MT65 544 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 OPRK1P41145 380 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 KIR2DS2P43631 304 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF137PP52743 207 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 IGLV3-21P80748 117 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 D2HGDHQ8N465 521 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 CORO2AQ92828 525 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 MUCL1Q96DR8 90 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 MARS2Q96GW9 593 aaKnown RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SFRP2Q96HF1 295 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 WDR61Q9GZS3 305 aaKnown RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 RNF122Q9H9V4 155 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SH2D2AQ9NP31 389 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SIT1Q9Y3P8 196 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SCN8AQ9UQD0 1980 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 IGHV1-45A0A0A0MS14 117 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF729A6NN14 1252 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 FAM157CP0CG43 387 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 RHOBP62745 196 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 COL5A1-AS1Q5SY13 56 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SSX8Q7RTT4 187 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 LINC00596Q86U02 117 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 C14orf144Q96I85 54 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SMOC1Q9H4F8 434 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 PLXND1Q9Y4D7 1925 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 KIAA1549LQ6ZVL6 1849 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 PIKFYVEQ9Y2I7 2098 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 IGHV5-10-1A0A0J9YXX1 117 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 LOC390937A0A1W2PQ73 354 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ZG16O60844 167 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 CSN3P07498 182 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 VDAC1P21796 283 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 CHRNB4P30926 498 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 MNX1P50219 401 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SPCS3P61009 180 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 PAFAH1B2P68402 229 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 LRRC29Q8WV35 223 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SCARF2Q96GP6 870 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF581Q9P0T4 197 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 HELZP42694 1942 aaKnown RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 LMO7DNF2Z398 122 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 KLRC4-KLRK1H3BQV0 150 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ZNF253O75346 499 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 LYZL6O75951 148 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 APELAP0DMC3 54 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 AGAP20933 346 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 MAGEA5P43359 124 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 DMWDQ09019 674 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 TMEM97Q5BJF2 176 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 ARSJQ5FYB0 599 aaPredicted RBP4.29□□□□□ -1.72
SYNE2-223ENST00000557005 VKORC1L1Q8N0U8 176 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SGMS2Q8NHU3 365 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 POM121L2Q96KW2 1035 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 TIMP4Q99727 224 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 FAM173AQ9BQD7 235 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 TM2D1Q9BX74 207 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SMDT1Q9H4I9 107 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 TUBA4BQ9H853 241 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SLC45A2Q9UMX9 530 aa4.29□□□□□ -1.72
SYNE2-223ENST00000557005 SCN5AQ14524 2016 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 C9JQL5 133 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 HSBP1O75506 76 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 OR2H2O95918 312 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 NXPH1P58417 271 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 GAB4Q2WGN9 574 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 SMIM21Q3B7S5 101 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 FNDC7Q5VTL7 733 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 ABLIM2Q6H8Q1 611 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 C5orf24Q7Z6I8 188 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 TAF15Q92804 592 aaKnown RBP eCLIP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 P2RX4Q99571 388 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 PXMP4Q9Y6I8 212 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 IGHV3-21A0A0B4J1V1 117 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 LOC389332A0A1B0GUA5 103 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 HELTA6NFD8 242 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 CDIPTO14735 213 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 SCGB2A1O75556 95 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 RBP4P02753 201 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 MPZP25189 248 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 LBHQ53QV2 105 aaPredicted RBP4.28□□□□□ -1.72
SYNE2-223ENST00000557005 FA2HQ7L5A8 372 aa4.28□□□□□ -1.72
SYNE2-223ENST00000557005 OR4X1Q8NH49 305 aa4.28□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms