RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 TMEM219Q86XT9 240 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 LINC00311Q8N616 119 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 C8orf31Q8N9H6 132 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 ZNF439Q8NDP4 499 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 OR2AK2Q8NG84 335 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 CT45A3Q8NHU0 189 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 PIFOQ8TCI5 191 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 CAPSLQ8WWF8 208 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 YPEL2Q96QA6 119 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 ABHD14AQ9BUJ0 271 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 ABCG5Q9H222 651 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 OR1A1Q9P1Q5 309 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 TCF19Q9Y242 345 aa9.23□□□□□ -0.93
CCDC88C-212ENST00000556767 SMIM31A0A1B0GVY4 71 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 FAM25AB3EWG3 89 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 FAM25CB3EWG5 89 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 FAM25GB3EWG6 89 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 BET1O15155 118 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 ST8SIA5O15466 376 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 HPGDSO60760 199 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 GAPDHP04406 335 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 EIF4EP06730 217 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 DTYMKP23919 212 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 RAB7AP51149 207 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 DYNLT3P51808 116 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 C12orf54Q6X4T0 127 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 DRAM1Q8N682 238 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 OR4A4PQ8NGN8 299 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 OR56B4Q8NH76 319 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 ISOC1Q96CN7 298 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 BCL7BQ9BQE9 202 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 AUNIPQ9H7T9 357 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 RAB18Q9NP72 206 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 PITPNC1Q9UKF7 332 aa9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 MRPS7Q9Y2R9 242 aaKnown RBP9.22□□□□□ -0.93
CCDC88C-212ENST00000556767 TMEM89A2RUT3 159 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 A6NDX4 124 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 TIMM23O14925 209 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 XRCC3O43542 346 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 APOA1P02647 267 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 FCER2P06734 321 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 PTHLHP12272 177 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 RAG2P55895 527 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 TAS2R20P59543 309 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 FOXL1Q12952 345 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 HES1Q14469 280 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 IGSF11Q5DX21 431 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 LIAT1Q6ZQX7 453 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 TGIF2LXQ8IUE1 241 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 OR8H3Q8N146 312 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 OR4F5Q8NH21 305 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 OR10J5Q8NHC4 309 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 EDARADDQ8WWZ3 215 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 GINS4Q9BRT9 223 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 RDH8Q9NYR8 311 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 C1RLQ9NZP8 487 aa9.21□□□□□ -0.94
CCDC88C-212ENST00000556767 IGKV1D-8A0A087WSZ0 117 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 IGHV3-72A0A0B4J1Y9 119 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 IGHV1-3A0A0C4DH29 117 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 IGKV1-6A0A0C4DH72 117 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 A0A1W2PPI3 338 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 MEIS3P1A6NDR6 274 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 H3BMQ9 156 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 RGS5O15539 181 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 CHST1O43916 411 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 SSX5O60225 188 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 SNRNP70P08621 437 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 FAM106CPP0CH98 169 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 ELK1P19419 428 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 RPL15P61313 204 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 ZNF816Q0VGE8 651 aaPredicted RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 HNF4GQ14541 408 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 HERPUD1Q15011 391 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 AWAT1Q58HT5 328 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 LY6G6FQ5SQ64 297 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 CCBE1Q6UXH8 406 aaPredicted RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 OR4C13Q8NGP0 309 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 RTN4IP1Q8WWV3 396 aaPredicted RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 ABHD14BQ96IU4 210 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 CMTM3Q96MX0 182 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 NPFFR1Q9GZQ6 430 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 PARP12Q9H0J9 701 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 C11orf54Q9H0W9 315 aaPredicted RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 RNF150Q9ULK6 438 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 RBM7Q9Y580 266 aaKnown RBP9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 CEPT1Q9Y6K0 416 aa9.2□□□□□ -0.94
CCDC88C-212ENST00000556767 CUBNO60494 3623 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 SAA2-SAA4A0A096LPE2 208 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 TXNL1O43396 289 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 IGKV1D-33P01593 117 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 IGKV1-33P01594 117 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 SAA2P0DJI9 122 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 TMEM11P17152 192 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 MDKP21741 143 aaPredicted RBP9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 OR3A3P47888 321 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 ARPC4P59998 168 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 RELBQ01201 579 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 SRSF7Q16629 238 aaKnown RBP eCLIP9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 Q6ZS49 121 aa9.19□□□□□ -0.94
CCDC88C-212ENST00000556767 Q6ZSV7 163 aa9.19□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms