RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 OR4P4Q8NGL7 312 aa11.51□□□□□ -0.57
SHMT2-217ENST00000555116 OR52I2Q8NH67 350 aa11.51□□□□□ -0.57
SHMT2-217ENST00000555116 MRPL30Q8TCC3 161 aaKnown RBP11.51□□□□□ -0.57
SHMT2-217ENST00000555116 C7orf50Q9BRJ6 194 aaKnown RBP11.51□□□□□ -0.57
SHMT2-217ENST00000555116 DPAGT1Q9H3H5 408 aa11.51□□□□□ -0.57
SHMT2-217ENST00000555116 ZNF221Q9UK13 617 aa11.51□□□□□ -0.57
SHMT2-217ENST00000555116 MINOS1-NBL1R4GNA1 71 aa11.51□□□□□ -0.57
SHMT2-217ENST00000555116 RCC1P18754 421 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-217ENST00000555116 VEGFCP49767 419 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 TAS2R20P59543 309 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 MRPS10P82664 201 aaKnown RBP11.5□□□□□ -0.57
SHMT2-217ENST00000555116 LTC4SQ16873 150 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 UBALD1Q8TB05 177 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 C15orf40Q8WUR7 153 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 FCAMRQ8WWV6 532 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 GCDHQ92947 438 aaPredicted RBP11.5□□□□□ -0.57
SHMT2-217ENST00000555116 ARL11Q969Q4 196 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 MALSU1Q96EH3 234 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 MBNL3Q9NUK0 354 aaKnown RBP11.5□□□□□ -0.57
SHMT2-217ENST00000555116 TRAPPC2LQ9UL33 140 aa11.5□□□□□ -0.57
SHMT2-217ENST00000555116 RBMX2Q9Y388 322 aaKnown RBP11.5□□□□□ -0.57
SHMT2-217ENST00000555116 TMEM89A2RUT3 159 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 C12orf77C9JDV5 145 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 XRCC3O43542 346 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 RAB6AP20340 208 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 AANATQ16613 207 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 LRRC75BQ2VPJ9 315 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 SPATA3Q8NHX4 192 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 ZNF596Q8TC21 504 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 SSX3Q99909 188 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 PLEKHJ1Q9NW61 149 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 HSF4Q9ULV5 492 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 F2RL2O00254 374 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 HKR1P10072 659 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 HTR1DP28221 377 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 LOXL3P58215 753 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 ACTG1P63261 375 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 SSX2Q16385 188 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 C6orf183Q5T699 404 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 Q6ZPA2 131 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 OR56B1Q8NGI3 324 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 OR52M1Q8NGK5 317 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 OR5R1Q8NH85 324 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 OR9G1Q8NH87 305 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 LEAP2Q969E1 77 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 ARHGAP5-AS1Q96IT6 56 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 VPREB3Q9UKI3 123 aa11.49□□□□□ -0.57
SHMT2-217ENST00000555116 FAM181BA6NEQ2 426 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 H3BUX3 64 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 GPR137BO60478 399 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 NAPSAO96009 420 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 TCRBP04435 133 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 PTHLHP12272 177 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 NKX2-5P52952 324 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-217ENST00000555116 PRRX1P54821 245 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 RAB25P57735 213 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 HLA-DRB5Q30154 266 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 MOGAT2Q3SYC2 334 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 PLAC9Q5JTB6 97 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 FAM53AQ6NSI3 398 aaPredicted RBP11.48□□□□□ -0.57
SHMT2-217ENST00000555116 TRAT1Q6PIZ9 186 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 OR1L1Q8NH94 360 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 PIFOQ8TCI5 191 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 TAF15Q92804 592 aaKnown RBP eCLIP11.48□□□□□ -0.57
SHMT2-217ENST00000555116 PTX4Q96A99 478 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 PECRQ9BY49 303 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 NUDT15Q9NV35 164 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 GFOD1Q9NXC2 390 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 COPZ2Q9P299 210 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 DPM3Q9P2X0 92 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 KLK11Q9UBX7 282 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 AK3Q9UIJ7 227 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 PSG11Q9UQ72 335 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 NUBP2Q9Y5Y2 271 aa11.48□□□□□ -0.57
SHMT2-217ENST00000555116 BTBD17A6NE02 478 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 LY6LH3BQJ8 138 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 J3QR06 171 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 RAB27BO00194 218 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 SDCBPO00560 298 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-217ENST00000555116 TOR1AO14656 332 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 IGHV3-7P01780 117 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 HBZP02008 142 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 ZNF880Q6PDB4 577 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 Q6ZTK2 550 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 C5orf24Q7Z6I8 188 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 TAF9BQ9HBM6 251 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 DIABLOQ9NR28 239 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 HILPDAQ9Y5L2 63 aa11.47□□□□□ -0.57
SHMT2-217ENST00000555116 TRAV6A0A075B6T7 132 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 TRBV6-6A0A0A6YYG2 114 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 ANKRD20A5PA0PJZ0 165 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 BUB1B-PAK6H3BSN5 160 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 SPINT2O43291 252 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 COMPP49747 757 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-217ENST00000555116 CCR6P51684 374 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 AP3S2P59780 193 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 FAM189A2Q15884 450 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 OLFML2AQ68BL7 652 aa11.46□□□□□ -0.57
SHMT2-217ENST00000555116 ZNF486Q96H40 463 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-217ENST00000555116 HDHD3Q9BSH5 251 aaPredicted RBP11.46□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 56.1 ms