RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 IGHV3-7P01780 117 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 FCGR3AP08637 254 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 PPP1CCP36873 323 aaKnown RBP11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 RAB13P51153 203 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 ARFRP1Q13795 201 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 PNLIPRP3Q17RR3 467 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 ARSJQ5FYB0 599 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 UTF1Q5T230 341 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 IDNKQ5T6J7 187 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 CCBE1Q6UXH8 406 aaPredicted RBP11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 Q6ZS49 121 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 TMEM219Q86XT9 240 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 LYG1Q8N1E2 194 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 DRAM1Q8N682 238 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 OR8H1Q8NGG4 311 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 CFHR4Q92496 578 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 ST6GALNAC6Q969X2 333 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 SPATA2Q9UM82 520 aa11.53□□□□□ -0.56
CCDC88C-207ENST00000554051 A0A0B4J203 849 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 A0A1W2PPE3 182 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 RAB29O14966 203 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 FABP7O15540 132 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 FGF16O43320 207 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 PEX14O75381 377 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 SNRNP70P08621 437 aaKnown RBP11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 SMIM18P0DKX4 95 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 SNRPBP14678 240 aaKnown RBP11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 TMEM11P17152 192 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 CD1BP29016 333 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 HES1Q14469 280 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 GNMTQ14749 295 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 MOGAT2Q3SYC2 334 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 CT45A1Q5HYN5 189 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 OR52L2PQ8NGH6 319 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 CT45A3Q8NHU0 189 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 CITED1Q99966 193 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 HDHD3Q9BSH5 251 aaPredicted RBP11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 CABLES2Q9BTV7 478 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 FUNDC2Q9BWH2 189 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 DCSTAMPQ9H295 470 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 ZNF702PQ9H963 129 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 SLC23A1Q9UHI7 598 aa11.52□□□□□ -0.57
CCDC88C-207ENST00000554051 GABARAPO95166 117 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 GNB3P16520 340 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 GNG2P59768 71 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 PLA2G7Q13093 441 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 HACD4Q5VWC8 232 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 MOB3BQ86TA1 216 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 OR2T10Q8NGZ9 312 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 S1PR3Q99500 378 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 IFI27L2Q9H2X8 130 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 RNF167Q9H6Y7 350 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 DIABLOQ9NR28 239 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 KCNK7Q9Y2U2 307 aa11.51□□□□□ -0.57
CCDC88C-207ENST00000554051 DNHD1Q96M86 4753 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 A0A075B6Q4 140 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 SAA2-SAA4A0A096LPE2 208 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 SLC31A2O15432 143 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 MOSP00540 346 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 IGKV1D-33P01593 117 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 IGKV1-33P01594 117 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 CLEC2LP0C7M8 214 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 SAA2P0DJI9 122 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 VDAC2P45880 294 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 EBI3Q14213 229 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 HERPUD1Q15011 391 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 UBE2NLQ5JXB2 153 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 Q6ZPA2 131 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 ZNF833PQ6ZTB9 187 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 ZNF436-AS1Q8NC38 126 aaPredicted RBP11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 AP3S1Q92572 193 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 SLC25A46Q96AG3 418 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 TOLLIPQ9H0E2 274 aa11.5□□□□□ -0.57
CCDC88C-207ENST00000554051 ANK2Q01484 3957 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 M0QZ24 198 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 CTXN2P0C2S0 81 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 REG1BP48304 166 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 ZNF134P52741 427 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 LSAMPQ13449 338 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 DIAPH2-AS1Q14236 149 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 PRR31Q5SQ13 230 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 GPR141Q7Z602 305 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 ANKRD13BQ86YJ7 626 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 KLHDC1Q8N7A1 406 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 OR10J5Q8NHC4 309 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 ACOT12Q8WYK0 555 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 TAF15Q92804 592 aaKnown RBP eCLIP11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 SLC25A38Q96DW6 304 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 CMTM3Q96MX0 182 aa11.49□□□□□ -0.57
CCDC88C-207ENST00000554051 OR5H14A6NHG9 310 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 SCTP09683 121 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 CD24P25063 80 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 RPS19P39019 145 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 CBX5P45973 191 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 LSM3P62310 102 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 CDNFQ49AH0 187 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 Q8N6K4 173 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 C5orf56Q8N8D9 126 aa11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 S100A16Q96FQ6 103 aaKnown RBP11.48□□□□□ -0.57
CCDC88C-207ENST00000554051 EAF1Q96JC9 268 aaPredicted RBP11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms