RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 P2RY1P47900 373 aa21.96■■□□□ 1.11
CCDC88C-205ENST00000553403 STUMQ69YW2 141 aa21.96■■□□□ 1.11
CCDC88C-205ENST00000553403 BAP18Q8IXM2 172 aa21.96■■□□□ 1.11
CCDC88C-205ENST00000553403 FAM216AQ8WUB2 273 aa21.96■■□□□ 1.11
CCDC88C-205ENST00000553403 PIEZO2Q9H5I5 2752 aa21.96■■□□□ 1.11
CCDC88C-205ENST00000553403 BOD1L1Q8NFC6 3051 aa21.95■■□□□ 1.11
CCDC88C-205ENST00000553403 SHISA9B4DS77 424 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 SSTR5P35346 364 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 P2RX3P56373 397 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 EIF5AP63241 154 aaKnown RBP21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 SNTB1Q13884 538 aaKnown RBP21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 GNMTQ14749 295 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 FAM209AQ5JX71 171 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 GPR157Q5UAW9 335 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 CYB5R3P00387 301 aaPredicted RBP21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 MUC1P15941 1255 aaPredicted RBP21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 NKX2-1P43699 371 aaPredicted RBP21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 TEX36Q5VZQ5 186 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 DMRTC2Q8IXT2 367 aaPredicted RBP21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 GALNT11Q8NCW6 608 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 OR2S2Q9NQN1 319 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 COQ3Q9NZJ6 369 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 NDRG3Q9UGV2 375 aa21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 RCL1Q9Y2P8 373 aaKnown RBP21.95■■□□□ 1.1
CCDC88C-205ENST00000553403 A0A1B0GW55 424 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 GPR137BO60478 399 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DUX4L2P0CJ85 424 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DUX4L3P0CJ86 424 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DUX4L4P0CJ87 422 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DUX4L5P0CJ88 424 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DUX4L6P0CJ89 424 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DUX4L7P0CJ90 424 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 FAM201AQ5SY85 155 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 ZNRF1Q8ND25 227 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DMBX1Q8NFW5 382 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 LSM10Q969L4 123 aaKnown RBP21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 C14orf79Q96F83 325 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 PLPPR2Q96GM1 343 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DCTN5Q9BTE1 182 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 EGLN1Q9GZT9 426 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 OR6C3Q9NZP0 311 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 DUX4Q9UBX2 424 aa21.94■■□□□ 1.1
CCDC88C-205ENST00000553403 PPP1CCP36873 323 aaKnown RBP21.93■■□□□ 1.1
CCDC88C-205ENST00000553403 TLE1Q04724 770 aa21.93■■□□□ 1.1
CCDC88C-205ENST00000553403 FAM234AQ9H0X4 552 aa21.93■■□□□ 1.1
CCDC88C-205ENST00000553403 OR2D2Q9H210 308 aa21.93■■□□□ 1.1
CCDC88C-205ENST00000553403 C11orf1Q9H5F2 150 aa21.93■■□□□ 1.1
CCDC88C-205ENST00000553403 BAHCC1Q9P281 2608 aa21.93■■□□□ 1.1
CCDC88C-205ENST00000553403 A0A1B0GU03 582 aa21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 LRRC30A6NM36 301 aa21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 FAM90A27PA6NNH2 459 aa21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 EIF4EBP1Q13541 118 aaPredicted RBP21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 LRRC46Q96FV0 321 aa21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 ZNF665Q9H7R5 613 aa21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 RAB9BQ9NP90 201 aa21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 JPT1Q9UK76 154 aa21.92■■□□□ 1.1
CCDC88C-205ENST00000553403 E7EQL1 145 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 GAPDHP04406 335 aaKnown RBP21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 CD3EP07766 207 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 PLA2G2AP14555 144 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 CCL8P80075 99 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 ID3Q02535 119 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 RFESDQ8TAC1 157 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 CXorf58Q96LI9 332 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 GAFA1Q96PS6 74 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 PFDN2Q9UHV9 154 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 RP1L1Q8IWN7 2480 aaPredicted RBP21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 MMP9P14780 707 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 PVALBP20472 110 aaPredicted RBP21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 ADORA2A-AS1P86434 159 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 ZNF585BQ52M93 769 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 FAM74A1Q5RGS3 127 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 ZNF788Q6ZQV5 615 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 LRRC20Q8TCA0 184 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 GPR146Q96CH1 333 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 RNF150Q9ULK6 438 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 COL6A6A6NMZ7 2263 aa21.91■■□□□ 1.1
CCDC88C-205ENST00000553403 KIAA2026Q5HYC2 2103 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 F2RL2O00254 374 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 IGKV1-39P01597 117 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 IGKV1D-39P04432 117 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 TMEM33P57088 247 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 EDARADDQ8WWZ3 215 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 MARVELD3Q96A59 401 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 FAM212BQ9NTI7 297 aaPredicted RBP21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 FBXL17Q9UF56 701 aa21.9■■□□□ 1.1
CCDC88C-205ENST00000553403 YPEL1O60688 119 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 PITX3O75364 302 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 CGB3P0DN86 165 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 CGB7P0DN87 165 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 EDDM3BP56851 147 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 CATR1Q13166 79 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 EFNB3Q15768 340 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 AANATQ16613 207 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 FAM53AQ6NSI3 398 aaPredicted RBP21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 TCTEX1D1Q8N7M0 179 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 YPEL2Q96QA6 119 aa21.89■■□□□ 1.1
CCDC88C-205ENST00000553403 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 J3QKU1 62 aa21.88■■□□□ 1.09
CCDC88C-205ENST00000553403 ZNF16P17020 682 aaPredicted RBP21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms