RNA–Protein interactions for RNA: ENST00000552491.5

LIMA1-212, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 2,652 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-212ENST00000552491 PFN1P07737 140 aaKnown RBP4.6□□□□□ -1.67
LIMA1-212ENST00000552491 PAX1P15863 534 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 NDUFB7P17568 137 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 S100GP29377 79 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 ELLP55199 621 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-212ENST00000552491 SERF2P84101 59 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 COL10A1Q03692 680 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 CLEC12BQ2HXU8 276 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 SSX9Q7RTT3 188 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 NECAP1Q8NC96 275 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 AGBL5Q8NDL9 886 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 OR5R1Q8NH85 324 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 SCGB1C1Q8TD33 95 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 PSMG3Q9BT73 122 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-212ENST00000552491 CABLES2Q9BTV7 478 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 ELOVL1Q9BW60 279 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 RIMS4Q9H426 269 aaPredicted RBP4.6□□□□□ -1.67
LIMA1-212ENST00000552491 R4GN57 208 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 AHCTF1Q8WYP5 2266 aa4.6□□□□□ -1.67
LIMA1-212ENST00000552491 SMCO3A2RU48 225 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 IFNL4K9M1U5 179 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 SYNGR2O43760 224 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 CNOT4O95628 575 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 IL18BPO95998 194 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 SERPINE2P07093 398 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 GZMBP10144 247 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 FGF5P12034 268 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 SRD5A2P31213 254 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 MDH2P40926 338 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 Q0VFX4 171 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 PMS2P11Q13670 270 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 RTP5Q14D33 572 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 P2RY6Q15077 328 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 ZNF585BQ52M93 769 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 FAM180AQ6UWF9 173 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 C16orf82Q7Z2V1 217 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 MRGPRGQ86SM5 289 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 RPP25LQ8N5L8 163 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 SAP25Q8TEE9 199 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 GATAD1Q8WUU5 269 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 KCNE4Q8WWG9 221 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 IL1F10Q8WWZ1 152 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 OR4C12Q96R67 309 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 PLK3Q9H4B4 646 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 LRFN1Q9P244 771 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 VAX2Q9UIW0 290 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 OR2W1Q9Y3N9 320 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 SPENQ96T58 3664 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 A0A1W2PR80 420 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 C5orf49A4QMS7 147 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 K7ESF4 209 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 DVL1O14640 695 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 RHBDL1O75783 438 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 TRAPPC6AO75865 159 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 SNRPCP09234 159 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 WNT2P09544 360 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 DEFA4P12838 97 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 APLNRP35414 380 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 ERVS71-1P61550 626 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 ARF1P84077 181 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 TESK1Q15569 626 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 ADIRFQ15847 76 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 LRRC75BQ2VPJ9 315 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 CEACAM21Q3KPI0 293 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 FAM53AQ6NSI3 398 aaPredicted RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 TMEM183AQ8IXX5 376 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 ZDHHC23Q8IYP9 409 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 ZNF664Q8N3J9 261 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 OR10A7Q8NGE5 316 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 RNASEH2CQ8TDP1 164 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 LSM10Q969L4 123 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 CLDN23Q96B33 292 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 PINX1Q96BK5 328 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 MISP3Q96FF7 219 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 DUSP23Q9BVJ7 150 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 WDR61Q9GZS3 305 aaKnown RBP4.59□□□□□ -1.67
LIMA1-212ENST00000552491 ZNF576Q9H609 170 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 SRD5A3Q9H8P0 318 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 PSENENQ9NZ42 101 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 GAB2Q9UQC2 676 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 PPP1R3CQ9UQK1 317 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 COL6A3P12111 3177 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 PRR14LQ5THK1 2151 aa4.59□□□□□ -1.67
LIMA1-212ENST00000552491 TRBV6-6A0A0A6YYG2 114 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 MAP1LC3B2A6NCE7 125 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 TRAPPC2LH3BP13 241 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 MKRN2OSH3BPM6 223 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 CYTIPO60759 359 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 ZNF737O75373 536 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 IFNA1P01562 189 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 RPL23P62829 140 aaKnown RBP4.59□□□□□ -1.68
LIMA1-212ENST00000552491 HBG1P69891 147 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 HBG2P69892 147 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 JOSD1Q15040 202 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-212ENST00000552491 NRN1LQ496H8 165 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 LBHQ53QV2 105 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-212ENST00000552491 SPANXN5Q5MJ07 72 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 ACSM6Q6P461 480 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 MKXQ8IYA7 352 aa4.59□□□□□ -1.68
LIMA1-212ENST00000552491 PRR18Q8N4B5 295 aa4.59□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms