RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 TSPAN31Q12999 210 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 CLVS2Q5SYC1 327 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 TMEM42Q69YG0 159 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 SLC25A26Q70HW3 274 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 GTSCR1Q86UQ5 136 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 PGAM4Q8N0Y7 254 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 OR52L1Q8NGH7 329 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 OR2T10Q8NGZ9 312 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 OTOSQ8NHW6 89 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 ANP32BQ92688 251 aaKnown RBP4.89□□□□□ -1.63
LIMA1-204ENST00000549064 COQ2Q96H96 371 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 C7orf34Q96L11 122 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 PBOV1Q9GZY1 135 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 RBFOX1Q9NWB1 397 aaKnown RBP4.89□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF107Q9UII5 783 aaPredicted RBP4.89□□□□□ -1.63
LIMA1-204ENST00000549064 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP4.89□□□□□ -1.63
LIMA1-204ENST00000549064 OR2W1Q9Y3N9 320 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 CDH10Q9Y6N8 788 aa4.89□□□□□ -1.63
LIMA1-204ENST00000549064 A0A0J9YWU9 116 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 C13orf42A0A1B0GVH6 325 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 TMEM269A0A1B0GVZ9 245 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF729A6NN14 1252 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-204ENST00000549064 PRR32B1ATL7 298 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 SOX15O60248 233 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 ENTPD6O75354 484 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 DHRS3O75911 302 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 KDM4BO94953 1096 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 OR2H2O95918 312 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 TTRP02766 147 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 PRKACAP17612 351 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 GLP1RP43220 463 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 RFX2P48378 723 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 BLVRAP53004 296 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 MAGOHP61326 146 aaKnown RBP4.88□□□□□ -1.63
LIMA1-204ENST00000549064 LIPEQ05469 1076 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 MFGE8Q08431 387 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF816Q0VGE8 651 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-204ENST00000549064 ATXN7L3Q14CW9 347 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-204ENST00000549064 LCN1P1Q5VSP4 162 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 BTNL8Q6UX41 500 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 SERPINA12Q8IW75 414 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 DEFB125Q8N687 156 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 THAP8Q8NA92 274 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 HAVCR2Q8TDQ0 301 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 GNPDA2Q8TDQ7 276 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 TSSK6Q9BXA6 273 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 TTTY10Q9BZA0 68 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 PARP11Q9NR21 331 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 ARMC1Q9NVT9 282 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 GLS2Q9UI32 602 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 ZNF580Q9UK33 172 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 GPR132Q9UNW8 380 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 MRPS28Q9Y2Q9 187 aaKnown RBP4.88□□□□□ -1.63
LIMA1-204ENST00000549064 KLK5Q9Y337 293 aaPredicted RBP4.88□□□□□ -1.63
LIMA1-204ENST00000549064 V9GYQ6 96 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 DNAH11Q96DT5 4516 aa4.88□□□□□ -1.63
LIMA1-204ENST00000549064 TRAV41A0A0B4J266 112 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 TEX13DA0A0J9YY54 714 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-204ENST00000549064 KBTBD11-OT1A0A1B0GTJ5 212 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 NME4O00746 187 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 DLGAP1O14490 977 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 TXNL1O43396 289 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 CNIH1O95406 144 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 SOX14O95416 240 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 MOSP00540 346 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 GAPDHP04406 335 aaKnown RBP4.87□□□□□ -1.63
LIMA1-204ENST00000549064 HSPB1P04792 205 aaKnown RBP4.87□□□□□ -1.63
LIMA1-204ENST00000549064 TFAP2AP05549 437 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 CD7P09564 240 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 CGB3P0DN86 165 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 CGB7P0DN87 165 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 NPBWR1P48145 328 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 BNIP1Q12981 228 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 ECSCRQ19T08 205 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 PHLDA2Q53GA4 152 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 FAM58AQ8N1B3 248 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 TMEM104Q8NE00 496 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 OR9Q2Q8NGE9 314 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 OR13A1Q8NGR1 328 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 OR10X1Q8NGY0 326 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 RFESDQ8TAC1 157 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 RGP1Q92546 391 aaPredicted RBP4.87□□□□□ -1.63
LIMA1-204ENST00000549064 TMEM106AQ96A25 262 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 FLYWCH2Q96CP2 140 aaKnown RBP4.87□□□□□ -1.63
LIMA1-204ENST00000549064 OVOL2Q9BRP0 275 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 RBM38Q9H0Z9 239 aaKnown RBP4.87□□□□□ -1.63
LIMA1-204ENST00000549064 OR51V1Q9H2C8 321 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 CALYQ9NYX4 217 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 IL20Q9NYY1 176 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 IDI2-AS1Q9NZ38 188 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 WDR83OSQ9Y284 106 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 GSTK1Q9Y2Q3 226 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 FBXO7Q9Y3I1 522 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 COX11Q9Y6N1 276 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 V9GYS6 101 aa4.87□□□□□ -1.63
LIMA1-204ENST00000549064 IGHV7-81A0A0B4J1V7 117 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 TRAV39A0A0B4J263 110 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 TRBV2A0A0J9YWF9 115 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 A0A1B0GTI1 187 aa4.86□□□□□ -1.63
LIMA1-204ENST00000549064 A0A1W2PN81 502 aa4.86□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms