RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 ITGB1BP1O14713 200 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 AZIN1O14977 448 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 DENRO43583 198 aaKnown RBP1.9□□□□□ -2.11
VPS29-205ENST00000548539 ZNF73O43830 326 aaPredicted RBP1.9□□□□□ -2.11
VPS29-205ENST00000548539 UGT2B7P16662 529 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 CFL1P23528 166 aaKnown RBP1.9□□□□□ -2.11
VPS29-205ENST00000548539 MAP3K7CLP57077 242 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 FAM229BQ4G0N7 80 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 DRAM2Q6UX65 266 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 SCGB1D4Q6XE38 83 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 Q6ZRU5 148 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 ATP5L2Q7Z4Y8 100 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 OR52E4Q8NGH9 312 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 OR2V1Q8NHB1 315 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 CYGBQ8WWM9 190 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 ACY3Q96HD9 319 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 ABHD14BQ96IU4 210 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 MROQ9BYG7 248 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 MED28Q9H204 178 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 FAM206AQ9NX38 181 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 MRPS16Q9Y3D3 137 aaKnown RBP1.9□□□□□ -2.11
VPS29-205ENST00000548539 PRR14LQ5THK1 2151 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 RAD50Q92878 1312 aa1.9□□□□□ -2.11
VPS29-205ENST00000548539 TINCRA0A1B0GVN0 87 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 VPS37CA5D8V6 355 aaPredicted RBP1.89□□□□□ -2.11
VPS29-205ENST00000548539 ZW10O43264 779 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 HPGDSO60760 199 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 STK16O75716 305 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 CRTAPO75718 401 aaPredicted RBP1.89□□□□□ -2.11
VPS29-205ENST00000548539 CBR1P16152 277 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 OR1E2P47887 323 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 LINC00313P59037 77 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 DAD1P61803 113 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 SLC35A2P78381 396 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 HTR4Q13639 388 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 PLCZ1Q86YW0 608 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 CD302Q8IX05 232 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 NATD1Q8N6N6 113 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 CCDC112Q8NEF3 446 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 ERMNQ8TAM6 284 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 LRRC19Q9H756 370 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 PARVAQ9NVD7 372 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 ZNHIT6Q9NWK9 470 aaKnown RBP1.89□□□□□ -2.11
VPS29-205ENST00000548539 TP53TG1Q9Y2A0 90 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 C15orf41Q9Y2V0 281 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 FIS1Q9Y3D6 152 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 ATP6V1DQ9Y5K8 247 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 HSPE1-MOB4S4R3N1 261 aa1.89□□□□□ -2.11
VPS29-205ENST00000548539 GOLGA8KD6RF30 607 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 GOLGA8MH3BSY2 632 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 MRASO14807 208 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 SOD1P00441 154 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 CXCL2P19875 107 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 CXCL3P19876 107 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 CDK2P24941 298 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 HSPA9P38646 679 aaKnown RBP1.88□□□□□ -2.11
VPS29-205ENST00000548539 CDK9P50750 372 aaKnown RBP1.88□□□□□ -2.11
VPS29-205ENST00000548539 RPL14P50914 215 aaKnown RBP1.88□□□□□ -2.11
VPS29-205ENST00000548539 AKR1C2P52895 323 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 H2BFSP57053 126 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 HPCAP84074 193 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 FOXF1Q12946 379 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 COTL1Q14019 142 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 DNM1P34Q6PK57 102 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 SDIM1Q6ZPB5 146 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 FAM9CQ8IZT9 166 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 DNAAF3Q8N9W5 541 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 OR8K1Q8NGG5 319 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 OR51H1Q8NH63 302 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 C20orf166-AS1Q96NR2 134 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 AICDAQ9GZX7 198 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 DRC3Q9H069 523 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 MS4A6AQ9H2W1 248 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 UBQLN4Q9NRR5 601 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 PSMD13Q9UNM6 376 aa1.88□□□□□ -2.11
VPS29-205ENST00000548539 BRD4O60885 1362 aaPredicted RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 LINC00862A6NCI5 91 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 F5H768 121 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 J3QRE1 110 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 STX10O60499 249 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 DEDDO75618 318 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 ATP5G1P05496 136 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 LINC00614P0C842 121 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 CPMP14384 443 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 NQO1P15559 274 aaKnown RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 HIST1H1CP16403 213 aaKnown RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 GZMHP20718 246 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 IFNGR2P38484 337 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 HERVK_113P63121 156 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 EIF4G1Q04637 1599 aaKnown RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 TMEM267Q0VDI3 215 aaPredicted RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 LRRC26Q2I0M4 334 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 MRPL51Q4U2R6 128 aaKnown RBP1.87□□□□□ -2.11
VPS29-205ENST00000548539 KRTAP13-1Q8IUC0 172 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 TMEM251Q8N6I4 163 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 OR10D3Q8NH80 312 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 GPR119Q8TDV5 335 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 SLC37A2Q8TED4 501 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 DDI1Q8WTU0 396 aa1.87□□□□□ -2.11
VPS29-205ENST00000548539 TLCD1Q96CP7 247 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 82.7 ms