RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 CD300CQ08708 224 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 OR2F1Q13607 317 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 ZNF660Q6AZW8 331 aaPredicted RBP6.97□□□□□ -1.29
CHD4-208ENST00000540960 ALKBH2Q6NS38 261 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 C11orf87Q6NUJ2 197 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 MYPOPQ86VE0 399 aaPredicted RBP6.97□□□□□ -1.29
CHD4-208ENST00000540960 ZNF561Q8N587 486 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 LRTM2Q8N967 370 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 MRPL30Q8TCC3 161 aaKnown RBP6.97□□□□□ -1.29
CHD4-208ENST00000540960 CASTOR1Q8WTX7 329 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 LRRC29Q8WV35 223 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 RTN4IP1Q8WWV3 396 aaPredicted RBP6.97□□□□□ -1.29
CHD4-208ENST00000540960 RDH5Q92781 318 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 TAF15Q92804 592 aaKnown RBP eCLIP6.97□□□□□ -1.29
CHD4-208ENST00000540960 IL22RA2Q969J5 263 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 GALMQ96C23 342 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 MEGF10Q96KG7 1140 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 SNX22Q96L94 193 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 C2orf50Q96LR7 162 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 RTBDNQ9BSG5 229 aaPredicted RBP6.97□□□□□ -1.29
CHD4-208ENST00000540960 CABLES2Q9BTV7 478 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 CHIAQ9BZP6 476 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 NAA60Q9H7X0 242 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 UNKLQ9H9P5 680 aaKnown RBP6.97□□□□□ -1.29
CHD4-208ENST00000540960 MBNL3Q9NUK0 354 aaKnown RBP6.97□□□□□ -1.29
CHD4-208ENST00000540960 OR6C3Q9NZP0 311 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 OR2W1Q9Y3N9 320 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 TMED3Q9Y3Q3 217 aa6.97□□□□□ -1.29
CHD4-208ENST00000540960 TRBV6-7A0A0A0MS04 114 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 IGHV4-61A0A0C4DH41 118 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 NKX6-3A6NJ46 265 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 DBX1A6NMT0 343 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 VWC2LB2RUY7 222 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 ATP6V1G2-DDX39BF2Z307 99 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 ABCD4O14678 606 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 RHBDL1O75783 438 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 TUSC2O75896 110 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 PSMB6P28072 239 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 IL2RGP31785 369 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 APOBEC3AP31941 199 aaPredicted RBP6.96□□□□□ -1.3
CHD4-208ENST00000540960 SERPINF1P36955 418 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 LUMP51884 338 aaPredicted RBP6.96□□□□□ -1.3
CHD4-208ENST00000540960 AP2S1P53680 142 aaPredicted RBP6.96□□□□□ -1.3
CHD4-208ENST00000540960 PIGPP57054 158 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 ZNF345Q14585 488 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 EFNB3Q15768 340 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 NCMAPQ5T1S8 102 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 WDR86Q86TI4 376 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 ZNF546Q86UE3 836 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 C9orf62Q8N4C0 152 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 OR52B4Q8NGK2 314 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 EDARADDQ8WWZ3 215 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 TOMM40LQ969M1 308 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 RAB39BQ96DA2 213 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 ABHD14BQ96IU4 210 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 OR2V2Q96R30 315 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 SLC5A7Q9GZV3 580 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 MSL2Q9HCI7 577 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 ESM1Q9NQ30 184 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 FAM212BQ9NTI7 297 aaPredicted RBP6.96□□□□□ -1.3
CHD4-208ENST00000540960 PIPOXQ9P0Z9 390 aa6.96□□□□□ -1.3
CHD4-208ENST00000540960 TRAV38-1A0A0B4J264 116 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 C13orf42A0A1B0GVH6 325 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 FAM25EA8MYX2 175 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 F8VVB4 439 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 F8VWA3 439 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 SIRPB1O00241 398 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 MPPED1O15442 326 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 RP2O75695 350 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 FSTL3O95633 263 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 LY86O95711 162 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 OR4A8P0C604 315 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 DUSP1P28562 367 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 HTD2P86397 168 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 FOXL1Q12952 345 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 HMGN3Q15651 99 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 ALKBH6Q3KRA9 238 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 ZNF672Q499Z4 452 aaPredicted RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 THOC7Q6I9Y2 204 aaKnown RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 EIF5AL1Q6IS14 154 aaKnown RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 VHLLQ6RSH7 139 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 LIAT1Q6ZQX7 453 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 Q6ZR03 302 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 C11orf53Q8IXP5 236 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 H1FOOQ8IZA3 346 aaPredicted RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 ADAD2Q8NCV1 583 aaKnown RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 ZNF418Q8TF45 676 aaPredicted RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 MRGPRFQ96AM1 343 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 RBMXL1Q96E39 390 aaKnown RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 HDHD3Q9BSH5 251 aaPredicted RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 TOLLIPQ9H0E2 274 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 DYNLRB1Q9NP97 96 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 SLC2A9Q9NRM0 540 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 LIN7CQ9NUP9 197 aaKnown RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 GAR1Q9NY12 217 aaKnown RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 OR14J1Q9UGF5 321 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 UBE2J1Q9Y385 318 aaPredicted RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 RNF115Q9Y4L5 304 aa6.95□□□□□ -1.3
CHD4-208ENST00000540960 RBM7Q9Y580 266 aaKnown RBP6.95□□□□□ -1.3
CHD4-208ENST00000540960 MAB21L2Q9Y586 359 aa6.95□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 52.2 ms