RNA–Protein interactions for RNA: ENST00000540738.3

COLCA1-204, Transcript of colorectal cancer associated 1, humanhuman

TSL 1 (best)

Gene COLCA1, Length 5,537 nt, Biotype antisense RNA, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COLCA1-204ENST00000540738 STXBP6Q8NFX7 210 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 OR2T10Q8NGZ9 312 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 RPUSD4Q96CM3 377 aaKnown RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 AMELYQ99218 206 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 ZNF705FA8MVS1 300 aaPredicted RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 RAMP1O60894 148 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 CDS2O95674 445 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 ZNF705DP0CH99 300 aaPredicted RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 ZNF705BP0CI00 300 aaPredicted RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 CDKN1AP38936 164 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 GALR1P47211 349 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 DHRS7BQ6IAN0 325 aaPredicted RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 AUP1Q9Y679 476 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 C17orf51A8MQB3 221 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 ZNF90Q03938 601 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 MITD1Q8WV92 249 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 STARD4Q96DR4 205 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 NRIP2Q9BQI9 281 aa12.2□□□□□ -0.46
COLCA1-204ENST00000540738 SAV1Q9H4B6 383 aaPredicted RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 TECRQ9NZ01 308 aaKnown RBP12.2□□□□□ -0.46
COLCA1-204ENST00000540738 PCP4L1A6NKN8 68 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 C4orf17Q53FE4 359 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 NUP37Q8NFH4 326 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 SMIM7Q9BQ49 75 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 DOK5Q9P104 306 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 INTS1Q8N201 2190 aaKnown RBP12.19□□□□□ -0.46
COLCA1-204ENST00000540738 LCN2P80188 198 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 USF2Q15853 346 aaPredicted RBP12.19□□□□□ -0.46
COLCA1-204ENST00000540738 GUCA2BQ16661 112 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 Q6ZNX1 250 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 BAGE3Q86Y29 109 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 BAGE2Q86Y30 109 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 FAM90A1Q86YD7 464 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 MRGPRFQ96AM1 343 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 TMEM167BQ9NRX6 74 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 J3QKU1 62 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 ZNHIT1O43257 154 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 THBDP07204 575 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 FAM162BQ5T6X4 162 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 RTN4RL2Q86UN3 420 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 PDPNQ86YL7 162 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 OR51I2Q9H344 312 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 METRNQ9UJH8 293 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 ZSWIM8A7E2V4 1837 aa12.19□□□□□ -0.46
COLCA1-204ENST00000540738 ZNF716A6NP11 495 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 G6PCP35575 357 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 IGHV3-72A0A0B4J1Y9 119 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 CDC34P49427 236 aaPredicted RBP12.18□□□□□ -0.46
COLCA1-204ENST00000540738 FDX2Q6P4F2 183 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 DYRK2Q92630 601 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 HSF4Q9ULV5 492 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 TM4SF5O14894 197 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 HIST1H1EP10412 219 aaKnown RBP12.18□□□□□ -0.46
COLCA1-204ENST00000540738 C1orf100Q5SVJ3 147 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 OR4C13Q8NGP0 309 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 RPL8P62917 257 aaKnown RBP12.18□□□□□ -0.46
COLCA1-204ENST00000540738 UBE2L3P68036 154 aaKnown RBP12.18□□□□□ -0.46
COLCA1-204ENST00000540738 SSX7Q7RTT5 188 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 FAM122BQ7Z309 247 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 ZNF645Q8N7E2 425 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 BLNKQ8WV28 456 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 GSX2Q9BZM3 304 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 ABHD1Q96SE0 405 aa12.18□□□□□ -0.46
COLCA1-204ENST00000540738 FAM24AA6NFZ4 105 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 CA7P43166 264 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 PAX5Q02548 391 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 RAB32Q13637 225 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 STPG3Q8N7X2 389 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 WFDC6Q9BQY6 131 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 DPM3Q9P2X0 92 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 PRSS54Q6PEW0 395 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 ZNF439Q8NDP4 499 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 MDS2Q8NDY4 140 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 NPAS1Q99742 590 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 MEF2CQ06413 473 aaPredicted RBP12.17□□□□□ -0.46
COLCA1-204ENST00000540738 CLEC18BQ6UXF7 455 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 UNQ9370/PRO34162Q6UXP9 181 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 TMEM91Q6ZNR0 172 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 CLEC5AQ9NY25 188 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 EXOSC2Q13868 293 aaKnown RBP12.17□□□□□ -0.46
COLCA1-204ENST00000540738 OR4A5Q8NH83 315 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 C1QTNF5Q9BXJ0 243 aa12.17□□□□□ -0.46
COLCA1-204ENST00000540738 CEBPDP49716 269 aaPredicted RBP12.16□□□□□ -0.46
COLCA1-204ENST00000540738 POLR2GP62487 172 aaKnown RBP eCLIP12.16□□□□□ -0.46
COLCA1-204ENST00000540738 SLC35E4Q6ICL7 350 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 COMMD1Q8N668 190 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 TVP23CQ96ET8 276 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 GREB1Q4ZG55 1949 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 IGKV3-7A0A075B6H7 116 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 IQCF6A8MYZ5 107 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 KCNAB3O43448 404 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 USF1P22415 310 aaPredicted RBP12.16□□□□□ -0.46
COLCA1-204ENST00000540738 P2RY1P47900 373 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 H3F3AP84243 136 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 LINC01590Q5TEZ4 76 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 OR4D10Q8NGI6 311 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 RHOVQ96L33 236 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 G6PC2Q9NQR9 355 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 PLSCR4Q9NRQ2 329 aa12.16□□□□□ -0.46
COLCA1-204ENST00000540738 PINLYPA6NC86 204 aa12.16□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms