RNA–Protein interactions for RNA: ENST00000539244.6

SS18-204, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 1 (best)

Gene SS18, Length 977 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-204ENST00000539244 RPS11P62280 158 aaKnown RBP eCLIP10.48□□□□□ -0.73
SS18-204ENST00000539244 HTD2P86397 168 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 NDPQ00604 133 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 GNMTQ14749 295 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 Q499Y3 187 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 YIF1BQ5BJH7 314 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 OR2G6Q5TZ20 316 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 DMKNQ6E0U4 476 aaPredicted RBP10.48□□□□□ -0.73
SS18-204ENST00000539244 SIGIRRQ6IA17 410 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 GLIPR1L1Q6UWM5 242 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 TMPRSS11AQ6ZMR5 421 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 ZNF833PQ6ZTB9 187 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 LYPD6Q86Y78 171 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 TCTEX1D1Q8N7M0 179 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 OR13C5Q8NGS8 318 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 YPEL2Q96QA6 119 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 TM2D3Q9BRN9 247 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 CST11Q9H112 138 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 ALX4Q9H161 411 aaPredicted RBP10.48□□□□□ -0.73
SS18-204ENST00000539244 GHITMQ9H3K2 345 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 BABAM2Q9NXR7 383 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 CKLFQ9UBR5 152 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 ERGIC3Q9Y282 383 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 PEX16Q9Y5Y5 336 aa10.48□□□□□ -0.73
SS18-204ENST00000539244 TRIM64CA6NLI5 447 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 WBP4O75554 376 aaKnown RBP10.47□□□□□ -0.73
SS18-204ENST00000539244 OR8U9P0C7N5 309 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 FUT3P21217 361 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 SLURP1P55000 103 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 GABPB1Q06547 395 aaPredicted RBP10.47□□□□□ -0.73
SS18-204ENST00000539244 C6orf141Q5SZD1 244 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 ZNF660Q6AZW8 331 aaPredicted RBP10.47□□□□□ -0.73
SS18-204ENST00000539244 FAM71F2Q6NXP2 309 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 OR52L2PQ8NGH6 319 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 MRPL30Q8TCC3 161 aaKnown RBP10.47□□□□□ -0.73
SS18-204ENST00000539244 GHSRQ92847 366 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 MUL1Q969V5 352 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 PGLYRP3Q96LB9 341 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 Q96M66 194 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 SLC29A1Q99808 456 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 C9orf16Q9BUW7 83 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 KIAA1456Q9P272 454 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 FOXA2Q9Y261 457 aaPredicted RBP10.47□□□□□ -0.73
SS18-204ENST00000539244 FBXO7Q9Y3I1 522 aa10.47□□□□□ -0.73
SS18-204ENST00000539244 STARD9Q9P2P6 4700 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 IGHV4OR15-8A0A075B7B6 117 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 A0A087WW49 117 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 SAA2-SAA4A0A096LPE2 208 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 TRBV5-7A0A0A0MS05 114 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 A0A1W2PN81 502 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 A8MZ25 164 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 RGS11O94810 467 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 SAA2P0DJI9 122 aaPredicted RBP10.46□□□□□ -0.73
SS18-204ENST00000539244 MGMTP16455 207 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 CHRNA7P36544 502 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 PPP1CCP36873 323 aaKnown RBP10.46□□□□□ -0.73
SS18-204ENST00000539244 SMN1Q16637 294 aaKnown RBP10.46□□□□□ -0.73
SS18-204ENST00000539244 AWAT2Q6E213 333 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 PYHIN1Q6K0P9 492 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 CD200R1LQ6Q8B3 271 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 JAGN1Q8N5M9 183 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 SELENOIQ9C0D9 397 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 BANF2Q9H503 90 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 PALMDQ9NP74 551 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 KCNIP1Q9NZI2 227 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 DIMT1Q9UNQ2 313 aaKnown RBP10.46□□□□□ -0.73
SS18-204ENST00000539244 LRRC42Q9Y546 428 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 NUBP2Q9Y5Y2 271 aa10.46□□□□□ -0.73
SS18-204ENST00000539244 IRGMA1A4Y4 181 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 UBE2QL1A1L167 161 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 ARPC1BO15143 372 aaKnown RBP10.45□□□□□ -0.74
SS18-204ENST00000539244 PDCD6O75340 191 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 MAS1P04201 325 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 EGR2P11161 476 aaPredicted RBP10.45□□□□□ -0.74
SS18-204ENST00000539244 OR3A3P47888 321 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 CX3CL1P78423 397 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 HMGN3Q15651 99 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 ECSCRQ19T08 205 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 ZNF485Q8NCK3 441 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 ARPC1AQ92747 370 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 GALMQ96C23 342 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 OR14A2Q96R54 314 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 IFI27L2Q9H2X8 130 aa10.45□□□□□ -0.74
SS18-204ENST00000539244 EXOSC1Q9Y3B2 195 aaKnown RBP10.45□□□□□ -0.74
SS18-204ENST00000539244 RRHO14718 337 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 HSPB1P04792 205 aaKnown RBP10.44□□□□□ -0.74
SS18-204ENST00000539244 MYL12AP19105 171 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 PITPNAQ00169 270 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 TMEM267Q0VDI3 215 aaPredicted RBP10.44□□□□□ -0.74
SS18-204ENST00000539244 DOC2BQ14184 412 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 C5orf24Q7Z6I8 188 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 Q8N1Y9 231 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 OR2AK2Q8NG84 335 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 FLYWCH2Q96CP2 140 aaKnown RBP10.44□□□□□ -0.74
SS18-204ENST00000539244 CYYR1Q96J86 154 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 OR4C12Q96R67 309 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 UQCC2Q9BRT2 126 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 FBXL15Q9H469 300 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 EDA2RQ9HAV5 297 aa10.44□□□□□ -0.74
SS18-204ENST00000539244 C19orf73Q9NVV2 129 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms