RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 SLC19A3Q9BZV2 496 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 OR51B6Q9H340 312 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 C11orf49Q9H6J7 331 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 ZNF286AQ9HBT8 521 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 DSCAML1Q8TD84 2053 aa1.25□□□□□ -2.21
CD44-238ENST00000534296 KMT2EQ8IZD2 1858 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 PLXNB1O43157 2135 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 LOC102725191A0A1B0GVB3 256 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 DHRS12A0PJE2 317 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 FNDC10F2Z333 226 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 MKRN2OSH3BPM6 223 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 CCRL2O00421 344 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 LECT2O14960 151 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 NDUFS6O75380 124 aaKnown RBP1.24□□□□□ -2.21
CD44-238ENST00000534296 DEDDO75618 318 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 PSMG1O95456 288 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 ASS1P00966 412 aaKnown RBP1.24□□□□□ -2.21
CD44-238ENST00000534296 RD3LP0DJH9 198 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 CSRP1P21291 193 aaKnown RBP1.24□□□□□ -2.21
CD44-238ENST00000534296 HINT1P49773 126 aaPredicted RBP1.24□□□□□ -2.21
CD44-238ENST00000534296 STC1P52823 247 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 ZNF117Q03924 483 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 BSPH1Q075Z2 132 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 FAM45BPQ6NSW5 357 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 WDR59Q6PJI9 974 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 SELENOHQ8IZQ5 122 aaKnown RBP1.24□□□□□ -2.21
CD44-238ENST00000534296 C2orf73Q8N5S3 287 aaPredicted RBP1.24□□□□□ -2.21
CD44-238ENST00000534296 LFNGQ8NES3 379 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 OR52E4Q8NGH9 312 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 OR4C16Q8NGL9 310 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 ZNRF2Q8NHG8 242 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 STOML3Q8TAV4 291 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 TAMM41Q96BW9 452 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 C7orf50Q9BRJ6 194 aaKnown RBP1.24□□□□□ -2.21
CD44-238ENST00000534296 CDCA4Q9BXL8 241 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 DRC3Q9H069 523 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 MED28Q9H204 178 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 UBQLN4Q9NRR5 601 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 FAM206AQ9NX38 181 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 SNX12Q9UMY4 172 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 LINC00588Q9Y4M8 146 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 LCTP09848 1927 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 NAV1Q8NEY1 1877 aa1.24□□□□□ -2.21
CD44-238ENST00000534296 LTBP4Q8N2S1 1624 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 IGHV3-73A0A0B4J1V6 119 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 C3orf84H3BNL1 204 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 TOX3O15405 576 aaPredicted RBP1.23□□□□□ -2.21
CD44-238ENST00000534296 CALUO43852 315 aaPredicted RBP1.23□□□□□ -2.21
CD44-238ENST00000534296 EPPINO95925 133 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 CRYBA1P05813 215 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 LINC00614P0C842 121 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 OR1E2P47887 323 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 TAS2R45P59539 299 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 BTN3A2P78410 334 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 GNA12Q03113 381 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 HTR4Q13639 388 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 ZNF181Q2M3W8 571 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 TIMM23BQ5SRD1 257 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 SDHAF4Q5VUM1 108 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 RASL11AQ6T310 242 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 PLEKHG7Q6ZR37 379 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 ZNF767PQ75MW2 155 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 SCXQ7RTU7 201 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 VN1R4Q7Z5H5 301 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 FAM9CQ8IZT9 166 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 OTUD6BQ8N6M0 293 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 OR4X1Q8NH49 305 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 CD200R1Q8TD46 325 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 TNFAIP8L1Q8WVP5 186 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 TLCD1Q96CP7 247 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 FAM210AQ96ND0 272 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 OR7D2Q96RA2 312 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 SMDT1Q9H4I9 107 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 SPACA1Q9HBV2 294 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 MS4A12Q9NXJ0 267 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 PUS1Q9Y606 427 aaKnown RBP eCLIP1.23□□□□□ -2.21
CD44-238ENST00000534296 GMEB1Q9Y692 573 aa1.23□□□□□ -2.21
CD44-238ENST00000534296 COL5A1P20908 1838 aaPredicted RBP1.23□□□□□ -2.21
CD44-238ENST00000534296 RAB3GAP2Q9H2M9 1393 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 CHD5Q8TDI0 1954 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 TRAV8-1A0A0A6YYK1 113 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 A0A0J9YX75 114 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 TMEM213A2RRL7 107 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 GOLGA6L10A6NI86 522 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 METTL15A6NJ78 407 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 C17orf98A8MV24 154 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 C8orf87E5RJ46 101 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 GOLGA8RI6L899 631 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 GSTZ1O43708 216 aaPredicted RBP1.22□□□□□ -2.21
CD44-238ENST00000534296 SYNGR1O43759 233 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 SSNA1O43805 119 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 APOEP02649 317 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 ORM1P02763 201 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 IGKV1-16P04430 117 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 TPM3P06753 285 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 ESDP10768 282 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 IFI30P13284 250 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 ZNF140P52738 457 aaPredicted RBP1.22□□□□□ -2.21
CD44-238ENST00000534296 TPM4P67936 248 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 SMAGPQ0VAQ4 97 aa1.22□□□□□ -2.21
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms