RNA–Protein interactions for RNA: ENST00000532602.1

PCDHA9-202, Transcript of protocadherin alpha 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PCDHA9, Length 6,293 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-202ENST00000532602 FAM90A12PA8MX19 464 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 FAM90A5PA8MXJ8 464 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 FAM90A23PA8MXZ1 464 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 C11orf94C9JXX5 98 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 FAM90A15PP0C7V4 464 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 FAM90A13PP0C7W8 464 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 FAM90A14PP0C7W9 464 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 FAM90A24PP0C7X0 464 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 KLF9Q13886 244 aaPredicted RBP12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 ADAD2Q8NCV1 583 aaKnown RBP12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 PARP11Q9NR21 331 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 CYB5R3P00387 301 aaPredicted RBP12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 CELA3AP09093 270 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 CEACAM1P13688 526 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 BSXQ3C1V8 233 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 MMD2Q8IY49 270 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 OR8G5Q8NG78 346 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 MRPS18AQ9NVS2 196 aaKnown RBP12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 HILPDAQ9Y5L2 63 aa12.79□□□□□ -0.36
PCDHA9-202ENST00000532602 COX5BP10606 129 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 SNAI3Q3KNW1 292 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 EBLN2Q6P2I7 272 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 SNRNP40Q96DI7 357 aaKnown RBP12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 PF4V1P10720 104 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 PDLIM4P50479 330 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 FDX2Q6P4F2 183 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 STPG3Q8N7X2 389 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 GPX7Q96SL4 187 aaPredicted RBP12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 ELOVL5Q9NYP7 299 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 SIRT4Q9Y6E7 314 aaPredicted RBP12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 ARID1AO14497 2285 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 RBFOX3A6NFN3 312 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 LEUTXA8MZ59 168 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 RGS13O14921 159 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 WFDC3Q8IUB2 231 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 VAMP8Q9BV40 100 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 HIGD1AQ9Y241 93 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 OR10G8Q8NGN5 311 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 LINC01560Q8TB33 94 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 OR10C1Q96KK4 312 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 AMELYQ99218 206 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 SPSB2Q99619 263 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 PKIBQ9C010 78 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 ST6GALNAC2Q9UJ37 374 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 FSTP19883 344 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 HNRNPA3P51991 378 aaKnown RBP12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 ZNF154Q13106 437 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 LRRC75BQ2VPJ9 315 aa12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 MRPL24Q96A35 216 aaKnown RBP12.78□□□□□ -0.36
PCDHA9-202ENST00000532602 A0A1W2PNV4 684 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 MFSD2BA6NFX1 497 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 SCO1O75880 301 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 RFPL3SP0C7P2 107 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 G0S2P27469 103 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 WASHC3Q9Y3C0 194 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 ZNF646O15015 1829 aaPredicted RBP12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 HERVK_113P61574 105 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 TMEM30BQ3MIR4 351 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 SLC25A47Q6Q0C1 308 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 PPP1R32Q7Z5V6 425 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 CHRNA10Q9GZZ6 450 aa12.77□□□□□ -0.36
PCDHA9-202ENST00000532602 SYNGR3O43761 229 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 HYPMO75409 117 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 AREGP15514 252 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 OR4A5Q8NH83 315 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 SLC35E3Q7Z769 313 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 C9orf172C9J069 976 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 MFNGO00587 321 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 PSG2P11465 335 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 GFRA1P56159 465 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 VAMP3Q15836 100 aa12.77□□□□□ -0.37
PCDHA9-202ENST00000532602 IGHV3-72A0A0B4J1Y9 119 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 J3QW42 95 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 GCM2O75603 506 aaPredicted RBP12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 CXorf1O96002 111 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 FAM157CP0CG43 387 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 ZP3P21754 424 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 USF1P22415 310 aaPredicted RBP12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 CD40P25942 277 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 COMPP49747 757 aaPredicted RBP12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 LYRM7Q5U5X0 104 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 BVESQ8NE79 360 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 NKX2-6A6NCS4 301 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 SMPD2O60906 423 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 HBZP02008 142 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 PRSS1P07477 247 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 SELENOTP62341 195 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 ANAPC16Q96DE5 110 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 KCNK17Q96T54 332 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 GHITMQ9H3K2 345 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 GP6Q9HCN6 339 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 VAX2Q9UIW0 290 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 PDE6DO43924 150 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 ROM1Q03395 351 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 FAM210BQ96KR6 192 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 SCNM1Q9BWG6 230 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 FCGR3AP08637 254 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 CRISP2P16562 243 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 IQCJQ1A5X6 159 aa12.76□□□□□ -0.37
PCDHA9-202ENST00000532602 TMEM91Q6ZNR0 172 aa12.76□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 78.3 ms