RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 PFDN6O15212 129 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 AKR7A2O43488 359 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 EIF4E2O60573 245 aaKnown RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 UTS2O95399 124 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 C6orf47O95873 294 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 C1GALT1C1LP0DN25 315 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 MYL2P10916 166 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 HPGDP15428 266 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 CRISP2P16562 243 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 ZNF32P17041 273 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 GSTM3P21266 225 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 KDELR1P24390 212 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 CX3CR1P49238 355 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 MRPL19P49406 292 aaKnown RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 UBE2E1P51965 193 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 NCBP2P52298 156 aaKnown RBP eCLIP2.44□□□□□ -2.02
CD44-235ENST00000532339 PSMD4P55036 377 aaKnown RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 AP1S2P56377 157 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 CLDN8P56748 225 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 TNFAIP6P98066 277 aaPredicted RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 GLO1Q04760 184 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 TNFRSF9Q07011 255 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 ECH1Q13011 328 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 UNC119Q13432 240 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 PSG5Q15238 335 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 GUCA2BQ16661 112 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 KCTD19Q17RG1 926 aaPredicted RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 ZNF404Q494X3 552 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 TRMT12Q53H54 448 aaKnown RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 C3orf33Q6P1S2 294 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 PP632Q6XCG6 107 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 LINC00322Q6ZN03 302 aaPredicted RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 AAED1Q7RTV5 226 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 PEX26Q7Z412 305 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 SPATA12Q7Z6I5 190 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 OSR2Q8N2R0 312 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 DEFB104AQ8WTQ1 72 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 NELFBQ8WX92 580 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 AURKBQ96GD4 344 aaPredicted RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 ZNF799Q96GE5 643 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 SH3GL3Q99963 347 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 LCE3DQ9BYE3 92 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 ANKRD60Q9BZ19 345 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 SLC19A3Q9BZV2 496 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 DNTTIP1Q9H147 329 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 TUBA4BQ9H853 241 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 ISYNA1Q9NPH2 558 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 RPRD1BQ9NQG5 326 aaKnown RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 SHPKQ9UHJ6 478 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 ZNF225Q9UK10 706 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 FBXO5Q9UKT4 447 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 APLNQ9ULZ1 77 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 ASB4Q9Y574 426 aa2.44□□□□□ -2.02
CD44-235ENST00000532339 F11RQ9Y624 299 aaKnown RBP2.44□□□□□ -2.02
CD44-235ENST00000532339 TRAV39A0A0B4J263 110 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 A0A1W2PRD5 423 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 A0A1W2PRF3 423 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 A0A1W2PRM7 423 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 A6NDX4 124 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 VGLL3A8MV65 326 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 SMC2O95347 1197 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 ACSM4P0C7M7 580 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 RCC1P18754 421 aaPredicted RBP2.43□□□□□ -2.02
CD44-235ENST00000532339 HRH1P35367 487 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 NUTF2P61970 127 aaKnown RBP2.43□□□□□ -2.02
CD44-235ENST00000532339 KIR2DS1Q14954 304 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 SPRNQ5BIV9 151 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 C1orf134Q5TEV5 83 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 AGBL2Q5U5Z8 902 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 ZNF621Q6ZSS3 439 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 LINC00173Q6ZV60 143 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 CMTM1Q8IZ96 169 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 GLYATL2Q8WU03 294 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 ZNF75AQ96N20 296 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 OR5B12Q96R08 314 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 ZNF382Q96SR6 550 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 MS4A8Q9BY19 250 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 GABARAPL3Q9BY60 117 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 CCNB1IP1Q9NPC3 277 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 SLCO1B3Q9NPD5 702 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 CTPS2Q9NRF8 586 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 SLC25A37Q9NYZ2 338 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 LGALS13Q9UHV8 139 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 FBXL3Q9UKT7 428 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 SLC22A14Q9Y267 594 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 GOLT1BQ9Y3E0 138 aa2.43□□□□□ -2.02
CD44-235ENST00000532339 NEBP20929 6669 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 SSPOA2VEC9 5147 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 HACD1B0YJ81 288 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 H3BNH8 94 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 RPL36A-HNRNPH2H7BZ11 118 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 AIREO43918 545 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 CNIH1O95406 144 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 HLA-HP01893 362 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 SMR3BP02814 79 aaPredicted RBP2.42□□□□□ -2.02
CD44-235ENST00000532339 SERPINE2P07093 398 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 CCDC172P0C7W6 258 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 CSNK2A2P19784 350 aaPredicted RBP2.42□□□□□ -2.02
CD44-235ENST00000532339 SYT1P21579 422 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 TUBG1P23258 451 aa2.42□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms