RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 SPACA5Q96QH8 159 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 OR2A7Q96R45 310 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 TSNAXQ99598 290 aaKnown RBP1.59□□□□□ -2.15
CD44-233ENST00000531141 GABRG3Q99928 467 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 THTPAQ9BU02 230 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 OR2AG1Q9H205 316 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 PARP11Q9NR21 331 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 TMEM38BQ9NVV0 291 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 TFR2Q9UP52 801 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 SLC7A11Q9UPY5 501 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 CFL2Q9Y281 166 aa1.59□□□□□ -2.15
CD44-233ENST00000531141 NRCAMQ92823 1304 aa1.59□□□□□ -2.16
CD44-233ENST00000531141 DOCK6Q96HP0 2047 aa1.59□□□□□ -2.16
CD44-233ENST00000531141 EML5Q05BV3 1969 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 A0A1W2PPV4 95 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 H7C2Y5 167 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 AQP9O43315 295 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 SYNGR2O43760 224 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 SLC37A4O43826 429 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 PLEKHA8P1O95397 391 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 PTTG1O95997 202 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 S100A6P06703 90 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 SMIM10L2AP0DMW4 78 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 SMIM10L2BP0DMW5 78 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 PTHLHP12272 177 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 CD99P14209 185 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TUBG1P23258 451 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TAS2R60P59551 318 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 MGAT3Q09327 533 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 ENDOGQ14249 297 aaKnown RBP1.58□□□□□ -2.16
CD44-233ENST00000531141 ELOCQ15369 112 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 VAMP3Q15836 100 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 IDNKQ5T6J7 187 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 ST13P4Q8IZP2 240 aaPredicted RBP1.58□□□□□ -2.16
CD44-233ENST00000531141 RPRMLQ8N4K4 120 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 LINC00337Q8N6G1 96 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 LRRC20Q8TCA0 184 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TCP10LQ8TDR4 215 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TNFRSF14Q92956 283 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 ITFG2Q969R8 447 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TMIGD2Q96BF3 282 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 C8orf76Q96K31 380 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 FAM210AQ96ND0 272 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TRNT1Q96Q11 434 aaKnown RBP1.58□□□□□ -2.16
CD44-233ENST00000531141 TMED9Q9BVK6 235 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TSGA10Q9BZW7 698 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 OR52A5Q9H2C5 316 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 GAL3ST2Q9H3Q3 398 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 DSN1Q9H410 356 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TUBG2Q9NRH3 451 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 NLE1Q9NVX2 485 aaPredicted RBP1.58□□□□□ -2.16
CD44-233ENST00000531141 CD300AQ9UGN4 299 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 C15orf41Q9Y2V0 281 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 ACOT9Q9Y305 439 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 TRAPPC1Q9Y5R8 145 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 ZNF780BQ9Y6R6 833 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 VPS13CQ709C8 3753 aa1.58□□□□□ -2.16
CD44-233ENST00000531141 BIRC6Q9NR09 4857 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 ACANP16112 2415 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 SIPA1L1O43166 1804 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 LAMA4Q16363 1823 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 IGLV10-54A0A075B6I4 117 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 IGKV1OR2-108A0A075B7D4 117 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 MYBPHLA2RUH7 354 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 E7EQL1 145 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 TCAPO15273 167 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 RGS5O15539 181 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 MBP02144 154 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 ZNF3P17036 446 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 IVDP26440 423 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 FUSP35637 526 aaKnown RBP eCLIP1.57□□□□□ -2.16
CD44-233ENST00000531141 BCAP31P51572 246 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 DYNLL1P63167 89 aaKnown RBP1.57□□□□□ -2.16
CD44-233ENST00000531141 TPM4P67936 248 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 IL5RAQ01344 420 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 PRNTQ86SH4 94 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 CPNE9Q8IYJ1 553 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 ASCC1Q8N9N2 400 aaKnown RBP1.57□□□□□ -2.16
CD44-233ENST00000531141 OR4K2Q8NGD2 314 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 OR13C9Q8NGT0 318 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 PPTC7Q8NI37 304 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 ANGPTL6Q8NI99 470 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 NDNFQ8TB73 568 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 UBA3Q8TBC4 463 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 PDCD6IPQ8WUM4 868 aaKnown RBP1.57□□□□□ -2.16
CD44-233ENST00000531141 DNAJB3Q8WWF6 145 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 TFGQ92734 400 aaPredicted RBP1.57□□□□□ -2.16
CD44-233ENST00000531141 CATSPER2Q96P56 530 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 C20orf144Q9BQM9 153 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 FBXO44Q9H4M3 255 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 KIR3DX1Q9H7L2 352 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 SPACA1Q9HBV2 294 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 TREM1Q9NP99 234 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 RBM22Q9NW64 420 aaKnown RBP eCLIP1.57□□□□□ -2.16
CD44-233ENST00000531141 TAC3Q9UHF0 121 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 DLG5Q8TDM6 1919 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 KMT2CQ8NEZ4 4911 aaKnown RBP1.57□□□□□ -2.16
CD44-233ENST00000531141 CUBNO60494 3623 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 ESPL1Q14674 2120 aa1.57□□□□□ -2.16
CD44-233ENST00000531141 PRRC2CQ9Y520 2896 aaKnown RBP1.57□□□□□ -2.16
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms