RNA–Protein interactions for RNA: ENST00000530836.5

VPS28-212, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,613 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-212ENST00000530836 DUX4L7P0CJ90 424 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 TMEM33P57088 247 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 RAP2BP61225 183 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 MSMO1Q15800 293 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 C11orf91Q3C1V1 193 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DUX4L9Q6RFH8 374 aaPredicted RBP17.54■□□□□ 0.4
VPS28-212ENST00000530836 BVESQ8NE79 360 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 LINC00574Q9H8X3 128 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 CALYQ9NYX4 217 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DUX4Q9UBX2 424 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 RBM7Q9Y580 266 aaKnown RBP17.54■□□□□ 0.4
VPS28-212ENST00000530836 IGKV1D-13A0A0B4J2D9 117 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 KBTBD11-OT1A0A1B0GTJ5 212 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 DBX1A6NMT0 343 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 GPR37O15354 613 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 MPPED1O15442 326 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 RGS11O94810 467 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 C1QBP02746 253 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 IGKV1-13P0DP09 117 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 SLC9A3R2Q15599 337 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 TMEM155Q4W5P6 130 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 PHLDA2Q53GA4 152 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 PRSS57Q6UWY2 283 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 LDLRAD3Q86YD5 345 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 ZBTB34Q8NCN2 500 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 EDARADDQ8WWZ3 215 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 RANBP3Q9H6Z4 567 aaPredicted RBP17.54■□□□□ 0.4
VPS28-212ENST00000530836 CLN8Q9UBY8 286 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 AKAP9Q99996 3911 aa17.54■□□□□ 0.4
VPS28-212ENST00000530836 OTOGQ6ZRI0 2925 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 PIGBOS1A0A0B4J2F0 54 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 ZNF818PQ6ZRF7 136 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 OR10A7Q8NGE5 316 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 OR52L2PQ8NGH6 319 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 OR5M8Q8NGP6 311 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 DMRTB1Q96MA1 342 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 DCTN5Q9BTE1 182 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 RAB18Q9NP72 206 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 CCL28Q9NRJ3 127 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 MYO9AB2RTY4 2548 aa17.53■□□□□ 0.4
VPS28-212ENST00000530836 LYNX1G3V0Z9 82 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 YPEL1O60688 119 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 LYNX1P0DP58 116 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 RPL31P62899 125 aaKnown RBP17.52■□□□□ 0.4
VPS28-212ENST00000530836 SRPXP78539 464 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 LYPD2Q6UXB3 125 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 KRTAP1-3Q8IUG1 177 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 RFESDQ8TAC1 157 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 UBALD1Q8TB05 177 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 YPEL2Q96QA6 119 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 GAL3ST2Q9H3Q3 398 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 MIOXQ9UGB7 285 aa17.52■□□□□ 0.4
VPS28-212ENST00000530836 DVL1O14640 695 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 WNT2P09544 360 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 LY6G6FQ5SQ64 297 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 NLRC3Q7RTR2 1065 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 NOXA1Q86UR1 476 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 OR52M1Q8NGK5 317 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 GNG12Q9UBI6 72 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 CTSZQ9UBR2 303 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 CREBBPQ92793 2442 aa17.51■□□□□ 0.39
VPS28-212ENST00000530836 PRRC2AP48634 2157 aaKnown RBP17.51■□□□□ 0.39
VPS28-212ENST00000530836 TRBV23-1A0A0A0MS06 115 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 ITGB1BP1O14713 200 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 HSD17B6O14756 317 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 LY6HO94772 140 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 OR8U9P0C7N5 309 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 SRSF4Q08170 494 aaKnown RBP17.5■□□□□ 0.39
VPS28-212ENST00000530836 C17orf58Q2M2W7 97 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 ANKRD55Q3KP44 614 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 Q5PR19 223 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 TBC1D26Q86UD7 250 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 ZNF645Q8N7E2 425 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 LRTM2Q8N967 370 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 OR8U1Q8NH10 309 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 KIAA2026Q5HYC2 2103 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 C3orf85A0A1B0GTC6 90 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 PPIHO43447 177 aaKnown RBP17.5■□□□□ 0.39
VPS28-212ENST00000530836 H2BFSP57053 126 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 CYCSP99999 105 aaKnown RBP17.5■□□□□ 0.39
VPS28-212ENST00000530836 C2orf68Q2NKX9 166 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 HYLS1Q96M11 299 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 PIPOXQ9P0Z9 390 aa17.5■□□□□ 0.39
VPS28-212ENST00000530836 PGLYRP1O75594 196 aaPredicted RBP17.49■□□□□ 0.39
VPS28-212ENST00000530836 OR5AC1P0C628 307 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 PPP1CCP36873 323 aaKnown RBP17.49■□□□□ 0.39
VPS28-212ENST00000530836 GZMKP49863 264 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 LOXL3P58215 753 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 TMEM187Q14656 261 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 MORN2Q502X0 79 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 LGI3Q8N145 548 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 OR2T35Q8NGX2 323 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 RAB39BQ96DA2 213 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 CHIAQ9BZP6 476 aa17.49■□□□□ 0.39
VPS28-212ENST00000530836 RNF212BA8MTL3 300 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 PHF1O43189 567 aaPredicted RBP17.48■□□□□ 0.39
VPS28-212ENST00000530836 SNAPC5O75971 98 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 GNMTQ14749 295 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 GSG1LQ6UXU4 331 aa17.48■□□□□ 0.39
VPS28-212ENST00000530836 LIAT1Q6ZQX7 453 aa17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms