RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 HSD17B10Q99714 261 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 PDCD1LG2Q9BQ51 273 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ANAPC13Q9BS18 74 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 AGMATQ9BSE5 352 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 TSSK6Q9BXA6 273 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 HES7Q9BYE0 225 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ZNF436Q9C0F3 470 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 OR2H1Q9GZK4 316 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR2D2Q9H210 308 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR52D1Q9H346 318 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 JPT2Q9H910 190 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ELL3Q9HB65 397 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 HES4Q9HCC6 221 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 MEPEQ9NQ76 525 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 SPANXB1Q9NS25 103 aaPredicted RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 FAM49BQ9NUQ9 324 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 FBXL12Q9NXK8 326 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 MRPL27Q9P0M9 148 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 NAT8Q9UHE5 227 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 NUFIP1Q9UHK0 495 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 TRAPPC2LQ9UL33 140 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 SCML2Q9UQR0 700 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 HIGD1AQ9Y241 93 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 HS3ST2Q9Y278 367 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 OR51B2Q9Y5P1 312 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 SNX10Q9Y5X0 201 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 UBIAD1Q9Y5Z9 338 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 ATRXP46100 2492 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 FANCAO15360 1455 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 TCOF1Q13428 1488 aaKnown RBP1.81□□□□□ -2.12
CD44-216ENST00000525293 MLH3Q9UHC1 1453 aa1.81□□□□□ -2.12
CD44-216ENST00000525293 TRANK1O15050 2925 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 A0A087WWV3 80 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TRAV38-1A0A0B4J264 116 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 IGHV2OR16-5A0A0B4J2B6 119 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 IGHV3-20A0A0C4DH32 117 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 A0A1B0GX51 115 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 NCBP2LA6PVI3 153 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 EEF1E1-BLOC1S5C9J1V9 151 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 INMT-MINDY4F8WBC2 141 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 J3KT08 172 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 M0R1B8 84 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 M0R2Z0 102 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 NME4O00746 187 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 FABP7O15540 132 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 EEF1E1O43324 174 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 EEDO75530 441 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 UPK1BO75841 260 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TOXO94900 526 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 SEMA4FO95754 770 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 LSM8O95777 96 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 NUDT14O95848 222 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 MOSP00540 346 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 CFDP00746 253 aaPredicted RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 HBZP02008 142 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 CTSDP07339 412 aaPredicted RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 ADRA2AP08913 450 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 OR4Q2P0C623 313 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 OR5G3P0C626 314 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 HLA-EP13747 358 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ZNF14P17017 642 aaPredicted RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 GGT1P19440 569 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ORM2P19652 201 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 CDK2P24941 298 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 EDNRAP25101 427 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 SFTPDP35247 375 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 G6PCP35575 357 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 CTRLP40313 264 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 MDH2P40926 338 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 ETV6P41212 452 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 CXCL12P48061 93 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ATP4BP51164 291 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ZNF83P51522 516 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 POLR2HP52434 150 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 LIM2P55344 173 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 DLX1P56177 255 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 NDUFV3P56181 108 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 CLDN17P56750 224 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ERVK-16P61578 105 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 GNG11P61952 73 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 PPP1CBP62140 327 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 RPS28P62857 69 aaKnown RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 TNFAIP6P98066 277 aaPredicted RBP1.8□□□□□ -2.12
CD44-216ENST00000525293 SP4Q02446 784 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 SLC38A11Q08AI6 406 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 ZNF154Q13106 437 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 UNC119Q13432 240 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 FZD2Q14332 565 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 LAGE3Q14657 143 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 GINS1Q14691 196 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 MEF2DQ14814 521 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 PEA15Q15121 130 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 RGNQ15493 299 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TMEM241Q24JQ0 296 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TIMM50Q3ZCQ8 353 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 LRRC37A5PQ49AS3 106 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 MORN2Q502X0 79 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 LRRC10Q5BKY1 277 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 TMEM69Q5SWH9 247 aa1.8□□□□□ -2.12
CD44-216ENST00000525293 FAM182AQ5T1J6 154 aa1.8□□□□□ -2.12
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms