RNA–Protein interactions for RNA: ENST00000520602.5

MCF2-209, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene MCF2, Length 3,945 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-209ENST00000520602 NGBQ9NPG2 151 aa8.62□□□□□ -1.03
MCF2-209ENST00000520602 SS18L1O75177 396 aaPredicted RBP8.62□□□□□ -1.03
MCF2-209ENST00000520602 GAPDHP04406 335 aaKnown RBP8.62□□□□□ -1.03
MCF2-209ENST00000520602 SSTR5P35346 364 aa8.62□□□□□ -1.03
MCF2-209ENST00000520602 RPS10P46783 165 aaKnown RBP8.62□□□□□ -1.03
MCF2-209ENST00000520602 CCL8P80075 99 aa8.62□□□□□ -1.03
MCF2-209ENST00000520602 MYPOPQ86VE0 399 aaPredicted RBP8.62□□□□□ -1.03
MCF2-209ENST00000520602 CCL17Q92583 94 aa8.62□□□□□ -1.03
MCF2-209ENST00000520602 LHX4Q969G2 390 aa8.62□□□□□ -1.03
MCF2-209ENST00000520602 MSI2Q96DH6 328 aaKnown RBP8.62□□□□□ -1.03
MCF2-209ENST00000520602 BSCL2Q96G97 398 aaPredicted RBP8.62□□□□□ -1.03
MCF2-209ENST00000520602 DCTN5Q9BTE1 182 aa8.62□□□□□ -1.03
MCF2-209ENST00000520602 CTNNBIP1Q9NSA3 81 aaPredicted RBP8.62□□□□□ -1.03
MCF2-209ENST00000520602 MED9Q9NWA0 146 aa8.62□□□□□ -1.03
MCF2-209ENST00000520602 EIF3GO75821 320 aaKnown RBP eCLIP8.61□□□□□ -1.03
MCF2-209ENST00000520602 SEC11BP0C7V7 166 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 TAGLN2P37802 199 aaKnown RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 FAM27E3Q08E93 113 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 HMGN3Q15651 99 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 TMEM108Q6UXF1 575 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 LYG1Q8N1E2 194 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 UBAC2Q8NBM4 344 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 SSC4DQ8WTU2 575 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 NIPSNAP3BQ9BS92 247 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 HIPK2Q9H2X6 1198 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 PLSCR2Q9NRY7 297 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 PLCE1Q9P212 2302 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 WIPI2Q9Y4P8 454 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 ZGRF1Q86YA3 2104 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 FGF8P55075 233 aaPredicted RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 HOXA4Q00056 320 aaPredicted RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 FAM201AQ5SY85 155 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 C1orf185Q5T7R7 199 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 CST9LP1Q5W188 147 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 ZNF787Q6DD87 383 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 ASCL4Q6XD76 172 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 ITLN1Q8WWA0 313 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 DMRTA2Q96SC8 542 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 NRIP2Q9BQI9 281 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 EGLN1Q9GZT9 426 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 INTS1Q8N201 2190 aaKnown RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 TRGV10A0A0A0MS01 117 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 A0A1B0GU03 582 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 HOXD4P09016 255 aaPredicted RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 WT1P19544 449 aaPredicted RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 SRSF3P84103 164 aaKnown RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 AVPI1Q5T686 147 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 FAM122CQ6P4D5 195 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 C20orf204Q6ZNR8 217 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 PARP11Q9NR21 331 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 MED13LQ71F56 2210 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 ACTL6BO94805 426 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 CEACAM1P13688 526 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 HOXB1P14653 301 aaPredicted RBP8.61□□□□□ -1.03
MCF2-209ENST00000520602 SNCAP37840 140 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 SLC38A11Q08AI6 406 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 DRAM1Q8N682 238 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 REG4Q9BYZ8 158 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 TUBD1Q9UJT1 453 aa8.61□□□□□ -1.03
MCF2-209ENST00000520602 IGSF23A1L1A6 192 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 NKX6-3A6NJ46 265 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 CEACAM18A8MTB9 384 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 RPS2P15880 293 aaKnown RBP8.6□□□□□ -1.03
MCF2-209ENST00000520602 OR2B8PP59922 312 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 RPP30P78346 268 aaKnown RBP8.6□□□□□ -1.03
MCF2-209ENST00000520602 FGFRL1Q8N441 504 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 ZNRF1Q8ND25 227 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 OR5D13Q8NGL4 314 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 TAAR6Q96RI8 345 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 CYTL1Q9NRR1 136 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 CLN8Q9UBY8 286 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 ANAPC10Q9UM13 185 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 SPTBN5Q9NRC6 3674 aaKnown RBP8.6□□□□□ -1.03
MCF2-209ENST00000520602 IGHV2OR16-5A0A0B4J2B6 119 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 C12orf77C9JDV5 145 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 TMPRSS2O15393 492 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 ENSAO43768 121 aaKnown RBP8.6□□□□□ -1.03
MCF2-209ENST00000520602 WISP2O76076 250 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 NAPSAO96009 420 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 OPN1MWP04001 364 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 OR8U8P0C7N1 319 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 OPN1MW2P0DN77 364 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 OPN1MW3P0DN78 364 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 NKX6-1P78426 367 aaPredicted RBP8.6□□□□□ -1.03
MCF2-209ENST00000520602 SRSF4Q08170 494 aaKnown RBP8.6□□□□□ -1.03
MCF2-209ENST00000520602 POM121Q96HA1 1249 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 RSG1Q9BU20 258 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 TRBV6-7A0A0A0MS04 114 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 UCP1P25874 307 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 NPBWR1P48145 328 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 SULT1A1P50225 295 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 ZNF273Q14593 569 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 LEAP2Q969E1 77 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 ISOC2Q96AB3 205 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 BOD1Q96IK1 185 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 C18orf12Q96KH6 178 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 ATP5SQ99766 215 aa8.6□□□□□ -1.03
MCF2-209ENST00000520602 PGA5P0DJD9 388 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 GZMHP20718 246 aa8.59□□□□□ -1.03
MCF2-209ENST00000520602 FGF7P21781 194 aa8.59□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms