RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 CHD3Q12873 2000 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 CLDN1O95832 211 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 HOXA4Q00056 320 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 CLN3Q13286 438 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF585BQ52M93 769 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 NUFIP2Q7Z417 695 aaKnown RBP7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 RIMS4Q9H426 269 aaPredicted RBP7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 SDF2L1Q9HCN8 221 aa7.85□□□□□ -1.15
LIMCH1-215ENST00000512632 OR5H1A6NKK0 313 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 KRASP01116 189 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 GPX4P36969 197 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF573Q86YE8 665 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 HLA-CQ95604 372 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 PRSS50Q9UI38 385 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 COL6A3P12111 3177 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 SERPINA7P05543 415 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 WNT5AP41221 380 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 LHX2P50458 406 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 SRSF7Q16629 238 aaKnown RBP eCLIP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 DCAF12Q5T6F0 453 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 TMEM105Q8N8V8 129 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 OR5T1Q8NG75 326 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 SMIM7Q9BQ49 75 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 CISD1Q9NZ45 108 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 GAB2Q9UQC2 676 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 TRAV1-1A0A0B4J248 108 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 CYB5R3P00387 301 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 IGKV1D-33P01593 117 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 IGKV1-33P01594 117 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 DEFA4P12838 97 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 CEACAM6P40199 344 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF808Q8N4W9 903 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 RPP25LQ8N5L8 163 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 OR2M7Q8NG81 312 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 POM121Q96HA1 1249 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 PRDM13Q9H4Q3 707 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 SLC25A22Q9H936 323 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 MED13Q9UHV7 2174 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 MAP1BP46821 2468 aaKnown RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 ZNF737O75373 536 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 IGLV2-14P01704 120 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 CEBPDP49716 269 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 HBG1P69891 147 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 HBG2P69892 147 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 PNPLA5Q7Z6Z6 429 aaPredicted RBP7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 MCEMP1Q8IX19 187 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 FGFRL1Q8N441 504 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 TMEM45BQ96B21 275 aa7.84□□□□□ -1.15
LIMCH1-215ENST00000512632 NBEAQ8NFP9 2946 aa7.84□□□□□ -1.16
LIMCH1-215ENST00000512632 MT-CO3P00414 261 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 APLNRP35414 380 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 TRA2AQ13595 282 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 LRRC75BQ2VPJ9 315 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 DPPA3Q6W0C5 159 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 MBD3L1Q8WWY6 194 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 VAX2Q9UIW0 290 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 CDIPTO14735 213 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 NEURL1O76050 574 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 HIST1H1BP16401 226 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 DUSP3P51452 185 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 CLDN18P56856 261 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 ERVS71-1P61550 626 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 PMP22Q01453 160 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 ABHD17BQ5VST6 288 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 GATAD1Q8WUU5 269 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 WDR61Q9GZS3 305 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 GFOD1Q9NXC2 390 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 KIAA1549Q9HCM3 1950 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 IGKV3D-15A0A087WSY6 115 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 B4DEV8 164 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 PLGLB1Q02325 96 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 SLC38A11Q08AI6 406 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 ZNF816Q0VGE8 651 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 RTP5Q14D33 572 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 SPINK9Q5DT21 86 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 UNQ6494/PRO21346Q6UXR6 183 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 DRAM1Q8N682 238 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 TAF15Q92804 592 aaKnown RBP eCLIP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 UFSP2Q9NUQ7 469 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 LAMP3Q9UQV4 416 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 PTBP3O95758 552 aaKnown RBP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 OR2H2O95918 312 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 GRPP07492 148 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 PNRC1Q12796 327 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 ALKBH6Q3KRA9 238 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 C6orf15Q6UXA7 325 aaPredicted RBP7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 ZNF600Q6ZNG1 722 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 MRGPRGQ86SM5 289 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 LINC00470Q9BZP3 86 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 LOXL2Q9Y4K0 774 aa7.83□□□□□ -1.16
LIMCH1-215ENST00000512632 RBMXL2O75526 392 aaKnown RBP7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 TFF1P04155 84 aa7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 BMP5P22003 454 aa7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 LINC00205P59089 165 aa7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 SSPNQ14714 243 aa7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 OR4X1Q8NH49 305 aa7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 PACRGQ96M98 296 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 ZNF703Q9H7S9 590 aaPredicted RBP7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 CLN8Q9UBY8 286 aa7.82□□□□□ -1.16
LIMCH1-215ENST00000512632 PHOX2AO14813 284 aa7.82□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms