RNA–Protein interactions for RNA: ENST00000496445.5

VTI1A-209, Transcript of vesicle transport through interaction with t-SNAREs 1A, human

TSL 2

Gene VTI1A, Length 853 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VTI1A-209	ENST00000496445	KCNIP1	Q9NZI2	227 aa		11.21	□□□□□ -0.61
VTI1A-209	ENST00000496445	NUDT19	A8MXV4	375 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	DUS4L	O95620	317 aa	Known RBP	11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	MYF6	P23409	242 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	HOXD3	P31249	432 aa	Predicted RBP	11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	RPS25	P62851	125 aa	Known RBP	11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	TEX38	Q6PEX7	206 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	TMEM91	Q6ZNR0	172 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	RNF152	Q8N8N0	203 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	UFD1	Q92890	307 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	RAX2	Q96IS3	184 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	RITA1	Q96K30	269 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	DUX3	Q96PT4	197 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	NEDD4L	Q96PU5	975 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	RASL11B	Q9BPW5	248 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	MRPL20	Q9BYC9	149 aa	Known RBP	11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	IFI27L2	Q9H2X8	130 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	DUSP21	Q9H596	190 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	SCN3B	Q9NY72	215 aa		11.2	□□□□□ -0.62
VTI1A-209	ENST00000496445	SAA2-SAA4	A0A096LPE2	208 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	WI2-2373I1.2	A0A1W2PRP0	233 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	YPEL1	O60688	119 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	BPNT1	O95861	308 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	NAPSA	O96009	420 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	SAA2	P0DJI9	122 aa	Predicted RBP	11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	CNTFR	P26992	372 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	SLC6A1	P30531	599 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	OR3A3	P47888	321 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	PNLIPRP3	Q17RR3	467 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	LY6G6F	Q5SQ64	297 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	ZNF880	Q6PDB4	577 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	ZNF833P	Q6ZTB9	187 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	ZNF695	Q8IW36	515 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	OR6M1	Q8NGM8	313 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	KCNG3	Q8TAE7	436 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	TMEM203	Q969S6	136 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	YPEL2	Q96QA6	119 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	NABP2	Q9BQ15	211 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	ANKRD60	Q9BZ19	345 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	LPAR5	Q9H1C0	372 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	DNAH7	Q8WXX0	4024 aa		11.19	□□□□□ -0.62
VTI1A-209	ENST00000496445	FOXI3	A8MTJ6	420 aa	Predicted RBP	11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	IGF1	P05019	195 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	SLC2A2	P11168	524 aa	Predicted RBP	11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	SOX6	P35712	828 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	MYCNOS	P40205	109 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	FOXE3	Q13461	319 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	TPBG	Q13641	420 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	P2RY14	Q15391	338 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	MMD	Q15546	238 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	DEFB136	Q30KP8	78 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	OR2AK2	Q8NG84	335 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	GALM	Q96C23	342 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	PARP12	Q9H0J9	701 aa	Known RBP	11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	ZNF580	Q9UK33	172 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	TPRKB	Q9Y3C4	175 aa		11.18	□□□□□ -0.62
VTI1A-209	ENST00000496445	HUWE1	Q7Z6Z7	4374 aa	Known RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	SLC17A2	O00624	439 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	ST8SIA5	O15466	376 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	RGS10	O43665	173 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	RRP9	O43818	475 aa	Known RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	RGS11	O94810	467 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	IGHG4	P01861	327 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	ELANE	P08246	267 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	HSMCR30	P0CW71	290 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	CRHBP	P24387	322 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	BLVRB	P30043	206 aa	Predicted RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	ACTB	P60709	375 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	MLLT11	Q13015	90 aa	Predicted RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	CXorf66	Q5JRM2	361 aa	Predicted RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	IL1F10	Q8WWZ1	152 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	KCTD7	Q96MP8	289 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	ZNF251	Q9BRH9	671 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	HDHD3	Q9BSH5	251 aa	Predicted RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	ISYNA1	Q9NPH2	558 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	ZNF107	Q9UII5	783 aa	Predicted RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	AK3	Q9UIJ7	227 aa		11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	AK6	Q9Y3D8	172 aa	Known RBP	11.17	□□□□□ -0.62
VTI1A-209	ENST00000496445	TRBV6-6	A0A0A6YYG2	114 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	SOCS1	O15524	211 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	CPE	P16870	476 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	VDAC1	P21796	283 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	PSMB8	P28062	276 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	MAP2K4	P45985	399 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	CDX1	P47902	265 aa	Predicted RBP	11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	FAM71F2	Q6NXP2	309 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	MOB1B	Q7L9L4	216 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	FAM89B	Q8N5H3	189 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	MYOZ3	Q8TDC0	251 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	GON7	Q9BXV9	100 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	GPR61	Q9BZJ8	451 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	CHMP1A	Q9HD42	196 aa	Predicted RBP	11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	ABRACL	Q9P1F3	81 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	LRRC42	Q9Y546	428 aa		11.16	□□□□□ -0.62
VTI1A-209	ENST00000496445	IGHV7-81	A0A0B4J1V7	117 aa		11.15	□□□□□ -0.62
VTI1A-209	ENST00000496445	CCL24	O00175	119 aa		11.15	□□□□□ -0.62
VTI1A-209	ENST00000496445	ATP6V0E1	O15342	81 aa		11.15	□□□□□ -0.62
VTI1A-209	ENST00000496445	NBR2	O15453	112 aa		11.15	□□□□□ -0.62
VTI1A-209	ENST00000496445	HLA-DRB1	P01911	266 aa		11.15	□□□□□ -0.62
VTI1A-209	ENST00000496445	ARSB	P15848	533 aa		11.15	□□□□□ -0.62

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