RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 HSPA12AO43301 675 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 CXorf67Q86X51 503 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 BCL2L2Q92843 193 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 TMEM9BQ9NQ34 198 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 KIAA1324LA8MWY0 1029 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 GALR2O43603 387 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 WDR1O75083 606 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 COX5BP10606 129 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 CEBPDP49716 269 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 ARL16Q0P5N6 197 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM58AQ8N1B3 248 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 RPRMQ9NS64 109 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 LYRM2Q9NU23 88 aaPredicted RBP14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 TAAR3PQ9P1P4 343 aa14.01□□□□□ -0.17
CCDC88B-210ENST00000494566 AKAP13Q12802 2813 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 CEBPZOSA8MTT3 80 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 SLC34A2O95436 690 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 PGA5P0DJD9 388 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 SPANXN5Q5MJ07 72 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 ZNF610Q8N9Z0 462 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 FRZBQ92765 325 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 CACNG5Q9UF02 275 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 IFNL4K9M1U5 179 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 GNG3P63215 75 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 PCSK4Q6UW60 755 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 LRP11Q86VZ4 500 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 GPR146Q96CH1 333 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 DLL3Q9NYJ7 618 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 ATP23Q9Y6H3 246 aa14□□□□□ -0.17
CCDC88B-210ENST00000494566 SERPINE2P07093 398 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 SOX8P57073 446 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 LINC00205P59089 165 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 GAMTQ14353 236 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 TUBA4BQ9H853 241 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 UFSP2Q9NUQ7 469 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 GAR1Q9NY12 217 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 INTS1Q8N201 2190 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 CDIPTO14735 213 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 TUSC2O75896 110 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 AGFG2O95081 481 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 GRPP07492 148 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 TRGC1P0CF51 173 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 CD200P41217 278 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 PAX9P55771 341 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 NKX6-1P78426 367 aaPredicted RBP13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 RTP5Q14D33 572 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 TRIP6Q15654 476 aaKnown RBP13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 CNEP1R1Q8N9A8 125 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 MEGF10Q96KG7 1140 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 PLSCR2Q9NRY7 297 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 FZR1Q9UM11 496 aa13.99□□□□□ -0.17
CCDC88B-210ENST00000494566 SPAARA0A1B0GVQ0 90 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 PITX3O75364 302 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 RNF224P0DH78 156 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 COL8A2P25067 703 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 RAB5CP51148 216 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 KHDC3LQ587J8 217 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 ZNF573Q86YE8 665 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 PLPPR1Q8TBJ4 325 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 GATAD1Q8WUU5 269 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 RPUSD4Q96CM3 377 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 TVP23CQ96ET8 276 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 HEATR1Q9H583 2144 aaKnown RBP13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 DEGS1O15121 323 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 PGLYRP1O75594 196 aaPredicted RBP13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 SAXO1Q8IYX7 474 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 CLDND2Q8NHS1 167 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 TRIB1Q96RU8 372 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 OR51I2Q9H344 312 aa13.98□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A10PA6NDY2 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A18PA6NE21 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A16PA6NEW6 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A20PA6NIJ5 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A8PA6NJQ4 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A7PA6NKC0 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A22PA8MWA6 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A12PA8MX19 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A5PA8MXJ8 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A23PA8MXZ1 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A15PP0C7V4 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A13PP0C7W8 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A14PP0C7W9 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FAM90A24PP0C7X0 464 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 WT1P19544 449 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 IGHV1-2P23083 117 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 ADIRFQ15847 76 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 ZNF787Q6DD87 383 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 COMMD1Q8N668 190 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 FDCSPQ8NFU4 85 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 SLC25A31Q9H0C2 315 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 OR14J1Q9UGF5 321 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 HOXA5P20719 270 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 UCP2P55851 309 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 ALKBH2Q6NS38 261 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 ZNF808Q8N4W9 903 aaPredicted RBP13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 DEFB124Q8NES8 71 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 ABHD5Q8WTS1 349 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 GAB2Q9UQC2 676 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 KIR2DS1A0A191URI9 304 aa13.97□□□□□ -0.17
CCDC88B-210ENST00000494566 UBE2L5PA0A1B0GUS4 154 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms