RNA–Protein interactions for RNA: ENST00000489741.1

PRPF40A-210, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 3

Gene PRPF40A, Length 776 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-210ENST00000489741 CDX1P47902 265 aaPredicted RBP4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 DCTN2Q13561 401 aaKnown RBP4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 KIAA0141Q14154 515 aaPredicted RBP4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 RBM39Q14498 530 aaKnown RBP4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 HNF4GQ14541 408 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 KIR2DS1Q14954 304 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 PNLIPRP3Q17RR3 467 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 KLHL22Q53GT1 634 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 PAN3Q58A45 887 aaKnown RBP4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 TEX38Q6PEX7 206 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 UNQ9370/PRO34162Q6UXP9 181 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 SLC35E3Q7Z769 313 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 LHFPL3Q86UP9 236 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 TGIF2LXQ8IUE1 241 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 ZNF695Q8IW36 515 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 C8orf31Q8N9H6 132 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 OR52M1Q8NGK5 317 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 RHOXF1Q8NHV9 184 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 RFESDQ8TAC1 157 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 NPIPB3Q92617 1050 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 C4orf36Q96KX1 117 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 DCLRE1BQ9H816 532 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 NEK6Q9HC98 313 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 IL36GQ9NZH8 169 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 AASSQ9UDR5 926 aa4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 ZMAT5Q9UDW3 170 aaKnown RBP4.96□□□□□ -1.62
PRPF40A-210ENST00000489741 IGKV2D-30A0A075B6S6 120 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 TRAV39A0A0B4J263 110 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 TMEM272A0A1B0GTI8 110 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 DPPA5A6NC42 116 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 SAC3D1A6NKF1 404 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 GABRPO00591 440 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 HSPB6O14558 160 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 IGHG4P01861 327 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 GAPDHP04406 335 aaKnown RBP4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 IGF1P05019 195 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 SSTR5P35346 364 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 GPR12P47775 334 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 ZNF137PP52743 207 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 PIGYQ3MUY2 71 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 Q3ZCU0 254 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 C1orf146Q5VVC0 180 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 FAM53AQ6NSI3 398 aaPredicted RBP4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 C9orf47Q6ZRZ4 202 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 SUMF2Q8NBJ7 301 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 KLHL30-AS1Q8NEE0 82 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 OR51A2Q8NGJ7 313 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 OR10K1Q8NGX5 313 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 OR5AK2Q8NH90 309 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 MYOZ3Q8TDC0 251 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 MRGPRDQ8TDS7 321 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 RGP1Q92546 391 aaPredicted RBP4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 DUX3Q96PT4 197 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 NR1H4Q96RI1 486 aaPredicted RBP4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 PDCD1LG2Q9BQ51 273 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 AAMDCQ9H7C9 122 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 LIN7CQ9NUP9 197 aaKnown RBP4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 IMPAD1Q9NX62 359 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 ZNF580Q9UK33 172 aa4.95□□□□□ -1.62
PRPF40A-210ENST00000489741 DYNC2H1Q8NCM8 4307 aaKnown RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 IGHV3-72A0A0B4J1Y9 119 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 A0A1W2PPE3 182 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 ZNF736B4DX44 427 aaPredicted RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 EI24O14681 340 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 HSD17B6O14756 317 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 ORC5O43913 435 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 MPZL2O60487 215 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 GPX5O75715 221 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 ATP5HO75947 161 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 FADS2O95864 444 aaKnown RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 MT-ND4P03905 459 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 HCKP08631 526 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 OCM2P0CE71 109 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 OCMP0CE72 109 aaPredicted RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 LIMS3P0CW19 117 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 LIMS4P0CW20 117 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 IGFBP3P17936 291 aaPredicted RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 RAB3AP20336 220 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 PSMB8P28062 276 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 GNG10P50151 68 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 RASSF2P50749 326 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 ALDH3A2P51648 485 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 GTF2A1P52655 376 aaPredicted RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 F2RL1P55085 397 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 RBM11P57052 281 aaKnown RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 SLC35B1P78383 322 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 RUNX1Q01196 453 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 RAB40BQ12829 278 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 MRPL28Q13084 256 aaKnown RBP4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 GPR50Q13585 617 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 HES1Q14469 280 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 ZSCAN26Q16670 478 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 LTC4SQ16873 150 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 ZNF497Q6ZNH5 498 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 MOB3BQ86TA1 216 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 FOXRED2Q8IWF2 684 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 GAPTQ8N292 157 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 FAM71E2Q8N5Q1 922 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 ZNF439Q8NDP4 499 aa4.94□□□□□ -1.62
PRPF40A-210ENST00000489741 OR8H1Q8NGG4 311 aa4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms