RNA–Protein interactions for RNA: ENST00000488896.1

PTPN4-212, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 4

Gene PTPN4, Length 575 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-212	ENST00000488896	SCN9A	Q15858	1988 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	PXDNL	A1KZ92	1463 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	PLCH2	O75038	1416 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	IGHV3-73	A0A0B4J1V6	119 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	ERICH2	A1L162	156 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	EFCAB9	A8MZ26	197 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	RD3L	P0DJH9	198 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	NQO2	P16083	231 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	PVALB	P20472	110 aa	Predicted RBP	0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	AKR1C2	P52895	323 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	STX3	Q13277	289 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	PDK2	Q15119	407 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	ZBTB6	Q15916	424 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	MAPK14	Q16539	360 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	TPRXL	Q17RH7	258 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	TRMT12	Q53H54	448 aa	Known RBP	0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	XKRX	Q6PP77	449 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	MTERF4	Q7Z6M4	381 aa	Known RBP	0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	SELENOH	Q8IZQ5	122 aa	Known RBP	0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	OR11H1	Q8NG94	326 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	TMIGD2	Q96BF3	282 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	ATP6V1G3	Q96LB4	118 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	FAM210A	Q96ND0	272 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	MED10	Q9BTT4	135 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	CDCA4	Q9BXL8	241 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	CFAP45	Q9UL16	551 aa		0.99	□□□□□ -2.25
PTPN4-212	ENST00000488896	USP42	Q9H9J4	1324 aa	Known RBP	0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	SYNRG	Q9UMZ2	1314 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	LINC00854	A0A1B0GVQ3	168 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	ZNF879	B4DU55	563 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896		C9J4A7	227 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	ADAP1	O75689	374 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	BRI3	O95415	125 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	ASS1	P00966	412 aa	Known RBP	0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	NPPA	P01160	153 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	GP1BA	P07359	652 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	SLC35E2B	P0CK96	405 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	LIMS3	P0CW19	117 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	LIMS4	P0CW20	117 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	ORM2	P19652	201 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	RCVRN	P35243	200 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	KCNJ3	P48549	501 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	PSMB3	P49720	205 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	HADHB	P55084	474 aa	Known RBP	0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	ACTB	P60709	375 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	ACTG1	P63261	375 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	SLC35A2	P78381	396 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	PMS2P3	Q13401	168 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	RASL11A	Q6T310	242 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	TMEM75	Q8N9X5	138 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	SPERT	Q8NA61	448 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	OR4P4	Q8NGL7	312 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	OR10A6	Q8NH74	314 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	RORB	Q92753	470 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	TMBIM1	Q969X1	311 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	SERPINB11	Q96P15	392 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	TBX5	Q99593	518 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	GPR22	Q99680	433 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	ZNF426	Q9BUY5	554 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	PECR	Q9BY49	303 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	CHST5	Q9GZS9	411 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	C11orf1	Q9H5F2	150 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	MRPS16	Q9Y3D3	137 aa	Known RBP	0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	FIS1	Q9Y3D6	152 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	MED13	Q9UHV7	2174 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	FN1	P02751	2386 aa	Known RBP	0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	RGS12	O14924	1447 aa		0.98	□□□□□ -2.25
PTPN4-212	ENST00000488896	TRPC5OS	A6NMA1	111 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	FAM25E	A8MYX2	175 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	YKT6	O15498	198 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	CYTH3	O43739	400 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	ATP6V1G2	O95670	118 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	FADS2	O95864	444 aa	Known RBP	0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	ESD	P10768	282 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	SLC25A16	P16260	332 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	CD36	P16671	472 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	ALOX5AP	P20292	161 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	GADD45A	P24522	165 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	CASQ1	P31415	396 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	CD200	P41217	278 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	TSPEAR-AS2	P59090	65 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	FAM3A	P98173	230 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	TMED1	Q13445	227 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	CCDC121	Q6ZUS5	278 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	COPS6	Q7L5N1	327 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	CCDC12	Q8WUD4	166 aa	Predicted RBP	0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	C19orf60	Q96EN9	201 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	TMEM56	Q96MV1	263 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	MBOAT7	Q96N66	472 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	MGLL	Q99685	303 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896		Q9BRP9	147 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	MRPL32	Q9BYC8	188 aa	Known RBP	0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	CHMP4B	Q9H444	224 aa	Known RBP	0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	TMEM216	Q9P0N5	145 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	FBXL3	Q9UKT7	428 aa		0.97	□□□□□ -2.25
PTPN4-212	ENST00000488896	DHRS12	A0PJE2	317 aa		0.96	□□□□□ -2.26
PTPN4-212	ENST00000488896	HSBP1L1	C9JCN9	74 aa		0.96	□□□□□ -2.26
PTPN4-212	ENST00000488896	SMLR1	H3BR10	107 aa		0.96	□□□□□ -2.26
PTPN4-212	ENST00000488896	MPZL2	O60487	215 aa		0.96	□□□□□ -2.26
PTPN4-212	ENST00000488896	PET100	P0DJ07	73 aa		0.96	□□□□□ -2.26

Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms