RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 UBE2E2Q96LR5 201 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 YPEL2Q96QA6 119 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 NABP2Q9BQ15 211 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 KLK15Q9H2R5 256 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 OR2S2Q9NQN1 319 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 SCN3BQ9NY72 215 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 GHRLQ9UBU3 117 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 PSORS1C1Q9UIG5 152 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 ZNF107Q9UII5 783 aaPredicted RBP9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 JPT1Q9UK76 154 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 RYR3Q15413 4870 aa9.54□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 IGHV7-81A0A0B4J1V7 117 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 UBE2QL1A1L167 161 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 NDUFA3O95167 84 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 HLA-DRB1P01911 266 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 VSIG8P0DPA2 414 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 CELP19835 753 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 CNTFRP26992 372 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 CHATP28329 748 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 WNT4P56705 351 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 C1orf100Q5SVJ3 147 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 ZNF880Q6PDB4 577 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 NANOGP1Q8N7R0 232 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 NKAIN3Q8N8D7 197 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 MINDY2Q8NBR6 621 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 BPIFB6Q8NFQ5 453 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 OR52L2PQ8NGH6 319 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 ZNF251Q9BRH9 671 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 ANKRD60Q9BZ19 345 aa9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP9.53□□□□□ -0.88
MSH5-SAPCD1-205ENST00000476085 G3V318 75 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 MYL12BO14950 172 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CRTAPO75718 401 aaPredicted RBP9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 NAPSAO96009 420 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR5H8P0DN80 308 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 VDAC1P21796 283 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 MYF6P23409 242 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PPP1CCP36873 323 aaKnown RBP9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 CRIP2P52943 208 aaPredicted RBP9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ACTBP60709 375 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 QRFPP83859 136 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 HMGN3Q15651 99 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RNLSQ5VYX0 342 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 IZUMO2Q6UXV1 221 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 LRRTM1Q86UE6 522 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PRR18Q8N4B5 295 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR11H1Q8NG94 326 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SULT4A1Q9BR01 284 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ABHD14AQ9BUJ0 271 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 MRPL20Q9BYC9 149 aaKnown RBP9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR51J1Q9H342 316 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 GNB4Q9HAV0 340 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TPSG1Q9NRR2 321 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ERGIC3Q9Y282 383 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 LRRC42Q9Y546 428 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 DNAH7Q8WXX0 4024 aa9.52□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PNMA8CA0A1B0GUJ8 204 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SEC14L6B5MCN3 397 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ATP6V0E1O15342 81 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SLC2A2P11168 524 aaPredicted RBP9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR3A3P47888 321 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RAB9AP51151 201 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 INSL4Q14641 139 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 MMDQ15546 238 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 C5orf64Q2M2E5 130 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FAM71F2Q6NXP2 309 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 AHSA2Q719I0 299 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 THRSPQ92748 146 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PRR25Q96S07 402 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 AGMATQ9BSE5 352 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TM2D1Q9BX74 207 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 IFI27L2Q9H2X8 130 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 KCNIP1Q9NZI2 227 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RAB26Q9ULW5 256 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TPRKBQ9Y3C4 175 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 WSB1Q9Y6I7 421 aa9.51□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SAA2-SAA4A0A096LPE2 208 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TRBV6-6A0A0A6YYG2 114 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 TMEM14DPA8MWL7 114 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ITGB1BP1O14713 200 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 NBR2O15453 112 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SOX15O60248 233 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 UBBP0CG47 229 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 SAA2P0DJI9 122 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 EGR2P11161 476 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 MAPK3P27361 379 aaPredicted RBP9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 HTR2CP28335 458 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 INSL3P51460 131 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RAB25P57735 213 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 GNB1P62873 340 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 RPS27AP62979 156 aaKnown RBP9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 NDPQ00604 133 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 UNC119Q13432 240 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 ACSM3Q53FZ2 586 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FAM27D1Q5T7N8 215 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 OR10K2Q6IF99 312 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 PHYHIPQ92561 330 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FAM46BQ96A09 425 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 GALMQ96C23 342 aa9.5□□□□□ -0.89
MSH5-SAPCD1-205ENST00000476085 FAAP24Q9BTP7 215 aa9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms