RNA–Protein interactions for RNA: ENST00000474059.1

CCDC88A-212, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5

Gene CCDC88A, Length 541 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-212ENST00000474059 PET100P0DJ07 73 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 CSRP1P21291 193 aaKnown RBP1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 AGTR1P30556 359 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 PPP1CCP36873 323 aaKnown RBP1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 ACTBP60709 375 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 ACTG1P63261 375 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 HTR4Q13639 388 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 KRTAP13-4Q3LI77 160 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 SPATA31B1PQ5VZV4 182 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 DNAAF3Q8N9W5 541 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 LFNGQ8NES3 379 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 OR52E4Q8NGH9 312 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 GPR119Q8TDV5 335 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 TNFAIP8L1Q8WVP5 186 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF514Q96K75 400 aaPredicted RBP1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 RBP7Q96R05 134 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 UPK3BQ9BT76 320 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 TMEM208Q9BTX3 173 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 C1QTNF6Q9BXI9 259 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 AICDAQ9GZX7 198 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 LRRC19Q9H756 370 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 UBQLN4Q9NRR5 601 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 DNAJC12Q9UKB3 198 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 HEY1Q9Y5J3 304 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 MYO16Q9Y6X6 1858 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 PLXNB1O43157 2135 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 PIK3R4Q99570 1358 aa1.19□□□□□ -2.22
CCDC88A-212ENST00000474059 RIMS2Q9UQ26 1411 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 LINC00862A6NCI5 91 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 METTL15A6NJ78 407 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 J3QKU1 62 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 CALUO43852 315 aaPredicted RBP1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 DEDDO75618 318 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 ARL6IP5O75915 188 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 OR13C7P0DN81 318 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 IGHV3-30-3P0DP02 117 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 CPMP14384 443 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 CFL1P23528 166 aaKnown RBP1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 F8A1P23610 371 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 CDK2P24941 298 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 CRATP43155 626 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 AKR1C2P52895 323 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 CLDN12P56749 244 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 LINC00313P59037 77 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 SLC35A2P78381 396 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 SMAGPQ0VAQ4 97 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 C4orf26Q17RF5 130 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 CLEC12BQ2HXU8 276 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 LRRC26Q2I0M4 334 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 MRPL51Q4U2R6 128 aaKnown RBP1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 MESTQ5EB52 335 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 SCGB1D4Q6XE38 83 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 NATD1Q8N6N6 113 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 OR5L1Q8NGL2 311 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 OR4K13Q8NH42 304 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 STOML3Q8TAV4 291 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 GNB1LQ9BYB4 327 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 UPF3BQ9BZI7 483 aaKnown RBP1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 METTL9Q9H1A3 318 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 MED28Q9H204 178 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 C16orf95Q9H693 158 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 WDR54Q9H977 334 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 EURLQ9NYK6 297 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 GLS2Q9UI32 602 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 SBDSQ9Y3A5 250 aaKnown RBP eCLIP1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 FIS1Q9Y3D6 152 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 SNX10Q9Y5X0 201 aa1.18□□□□□ -2.22
CCDC88A-212ENST00000474059 RAD50Q92878 1312 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 EIF4G1Q04637 1599 aaKnown RBP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 VPS37CA5D8V6 355 aaPredicted RBP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 FABP12A6NFH5 140 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 GOLGA6L10A6NI86 522 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ODF3BA8MYP8 253 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF189O75820 626 aaPredicted RBP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 LY6HO94772 140 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 SOD1P00441 154 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 HBZP02008 142 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 NQO1P15559 274 aaKnown RBP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 PSMD8P48556 350 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 UBE2G2P60604 165 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 SKP1P63208 163 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ZNF117Q03924 483 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 DMTNQ08495 405 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 TBC1D28Q2M2D7 210 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 HLA-DRB5Q30154 266 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 DNAL1Q4LDG9 190 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ACSBG2Q5FVE4 666 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 PLCZ1Q86YW0 608 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 FUNDC1Q8IVP5 155 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 RIBC1Q8N443 379 aaPredicted RBP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 OR11H1Q8NG94 326 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 OR4C16Q8NGL9 310 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 OR51H1Q8NH63 302 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ERMNQ8TAM6 284 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 PPCDCQ96CD2 204 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ACY3Q96HD9 319 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 ABHD14BQ96IU4 210 aa1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 KLF6Q99612 283 aaPredicted RBP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 C7orf50Q9BRJ6 194 aaKnown RBP1.17□□□□□ -2.22
CCDC88A-212ENST00000474059 DCUN1D5Q9BTE7 237 aa1.17□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms