RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 MRPL20Q9BYC9 149 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 ANKRD60Q9BZ19 345 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 DUSP21Q9H596 190 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 PLGRKTQ9HBL7 147 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 ZFP57Q9NU63 452 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 ABRACLQ9P1F3 81 aa12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 AK6Q9Y3D8 172 aaKnown RBP12.37□□□□□ -0.43
CCDC88B-205ENST00000472524 A0A0A6YYD4 124 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 YPEL1O60688 119 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 RGS11O94810 467 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 SLC2A2P11168 524 aaPredicted RBP12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 THBS3P49746 956 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 KRTAP10-11P60412 298 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 QRFPP83859 136 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 TPBGQ13641 420 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 VAX1Q5SQQ9 334 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 C11orf87Q6NUJ2 197 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 TEX38Q6PEX7 206 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 LCNL1Q6ZST4 164 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 ODF3L1Q8IXM7 274 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 SVOPQ8N4V2 548 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 FAM71E2Q8N5Q1 922 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 OR8H1Q8NGG4 311 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 YPEL2Q96QA6 119 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 GFI1Q99684 422 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 PLEKHJ1Q9NW61 149 aa12.36□□□□□ -0.43
CCDC88B-205ENST00000472524 SOCS1O15524 211 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 RRP9O43818 475 aaKnown RBP12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 DUS4LO95620 317 aaKnown RBP12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 RPLP1P05386 114 aaKnown RBP12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 CRHBPP24387 322 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 SOX6P35712 828 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 OR3A3P47888 321 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 MLLT11Q13015 90 aaPredicted RBP12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 MMDQ15546 238 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 TRAM1Q15629 374 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 PNLIPRP3Q17RR3 467 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 OR2AK2Q8NG84 335 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 DUX3Q96PT4 197 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 NABP2Q9BQ15 211 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 URM1Q9BTM9 101 aaKnown RBP12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 LPAR5Q9H1C0 372 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 VCX3BQ9H321 246 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 ISYNA1Q9NPH2 558 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 LRRC42Q9Y546 428 aa12.35□□□□□ -0.43
CCDC88B-205ENST00000472524 SAA2-SAA4A0A096LPE2 208 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 ERICH4A6NGS2 130 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 SLC17A2O00624 439 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 ST8SIA5O15466 376 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 ARL6IP5O75915 188 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 NAPSAO96009 420 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 SAA2P0DJI9 122 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 CD37P11049 281 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 ARSBP15848 533 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 CPEP16870 476 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 CNTFRP26992 372 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 CALRP27797 417 aaKnown RBP12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 HOXD3P31249 432 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 CLDN12P56749 244 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 RAB11BQ15907 218 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 CXorf66Q5JRM2 361 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 IZUMO2Q6UXV1 221 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 ZNF833PQ6ZTB9 187 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 PRSS48Q7RTY5 328 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 ZNF695Q8IW36 515 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 CNBD2Q96M20 576 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 MGLLQ99685 303 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 HDHD3Q9BSH5 251 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 GON7Q9BXV9 100 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 IFI27L2Q9H2X8 130 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 STEAP1Q9UHE8 339 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 ZNF107Q9UII5 783 aaPredicted RBP12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 AK3Q9UIJ7 227 aa12.34□□□□□ -0.43
CCDC88B-205ENST00000472524 WI2-2373I1.2A0A1W2PRP0 233 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 VDAC1P21796 283 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 PSMA1P25786 263 aaKnown RBP12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 SLC6A1P30531 599 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 MYCNOSP40205 109 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 RAB25P57735 213 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 ACTBP60709 375 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 FABP5Q01469 135 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 LY6G6FQ5SQ64 297 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 ZNF880Q6PDB4 577 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 MOB1BQ7L9L4 216 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 DPF1Q92782 380 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 RITA1Q96K30 269 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 ZNF251Q9BRH9 671 aa12.33□□□□□ -0.44
CCDC88B-205ENST00000472524 VEGFCP49767 419 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 HLA-DRB3P79483 266 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 FOXE3Q13461 319 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 DEFB136Q30KP8 78 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 DEFB121Q5J5C9 76 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 RAX2Q96IS3 184 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 KCTD7Q96MP8 289 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 P2RX4Q99571 388 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 GPR61Q9BZJ8 451 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 PARP12Q9H0J9 701 aaKnown RBP12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 SLC23A1Q9UHI7 598 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 COL7A1Q02388 2944 aa12.32□□□□□ -0.44
CCDC88B-205ENST00000472524 RYR3Q15413 4870 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms