RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 HTR2CP28335 458 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 HOXD3P31249 432 aaPredicted RBP12.78□□□□□ -0.36
COL9A3-208ENST00000469802 SOX6P35712 828 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 AQP4P55087 323 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 HSD17B12Q53GQ0 312 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 ZNF880Q6PDB4 577 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 ZNF833PQ6ZTB9 187 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 C6orf201Q7Z4U5 140 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 KCNG3Q8TAE7 436 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 NRG4Q8WWG1 115 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 RAX2Q96IS3 184 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 NEDD4LQ96PU5 975 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 NICN1Q9BSH3 213 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 MCRIP2Q9BUT9 160 aaKnown RBP12.78□□□□□ -0.36
COL9A3-208ENST00000469802 MRPL20Q9BYC9 149 aaKnown RBP12.78□□□□□ -0.36
COL9A3-208ENST00000469802 IFI27L2Q9H2X8 130 aa12.78□□□□□ -0.36
COL9A3-208ENST00000469802 A0A0A6YYD4 124 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 BPNT1O95861 308 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 ELANEP08246 267 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 MED22Q15528 200 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 LCNL1Q6ZST4 164 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 CEACAM19Q7Z692 300 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 OR6M1Q8NGM8 313 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 MYOZ3Q8TDC0 251 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 GALMQ96C23 342 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 GFI1Q99684 422 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 NABP2Q9BQ15 211 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 FAAP24Q9BTP7 215 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 DUSP21Q9H596 190 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 SCN3BQ9NY72 215 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 LRRC42Q9Y546 428 aa12.77□□□□□ -0.37
COL9A3-208ENST00000469802 SAA2-SAA4A0A096LPE2 208 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 RGS11O94810 467 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 SAA2P0DJI9 122 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-208ENST00000469802 PSMB8P28062 276 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 CDX1P47902 265 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-208ENST00000469802 ACTBP60709 375 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 TPBGQ13641 420 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 MMDQ15546 238 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 CXorf66Q5JRM2 361 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-208ENST00000469802 LIPKQ5VXJ0 399 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 FAM71F2Q6NXP2 309 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 TMEM91Q6ZNR0 172 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 MOB1BQ7L9L4 216 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 DPF1Q92782 380 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 UFD1Q92890 307 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 DUX3Q96PT4 197 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 ZNF107Q9UII5 783 aaPredicted RBP12.76□□□□□ -0.37
COL9A3-208ENST00000469802 DNAH9Q9NYC9 4486 aa12.76□□□□□ -0.37
COL9A3-208ENST00000469802 TRBV6-6A0A0A6YYG2 114 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 FOXI3A8MTJ6 420 aaPredicted RBP12.75□□□□□ -0.37
COL9A3-208ENST00000469802 CCL24O00175 119 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 HLA-DRB1P01911 266 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 SLC2A2P11168 524 aaPredicted RBP12.75□□□□□ -0.37
COL9A3-208ENST00000469802 VDAC1P21796 283 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 MYF6P23409 242 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 OR3A3P47888 321 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 KIR2DS1Q14954 304 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 DEFB136Q30KP8 78 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 OR2AK2Q8NG84 335 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 OR8U1Q8NH10 309 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 RITA1Q96K30 269 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 ZNF251Q9BRH9 671 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 ANKRD60Q9BZ19 345 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 LPAR5Q9H1C0 372 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 ISYNA1Q9NPH2 558 aa12.75□□□□□ -0.37
COL9A3-208ENST00000469802 SLC17A2O00624 439 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 NDUFA3O95167 84 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 CNTFRP26992 372 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 BLVRBP30043 206 aaPredicted RBP12.74□□□□□ -0.37
COL9A3-208ENST00000469802 PPIFP30405 207 aaKnown RBP12.74□□□□□ -0.37
COL9A3-208ENST00000469802 RPS25P62851 125 aaKnown RBP12.74□□□□□ -0.37
COL9A3-208ENST00000469802 FHL3Q13643 280 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 FAM89BQ8N5H3 189 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 NPBQ8NG41 125 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 C4orf3Q8WVX3 66 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 TMEM203Q969S6 136 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 KCTD7Q96MP8 289 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 CHCHD6Q9BRQ6 235 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 ABRACLQ9P1F3 81 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 TPRKBQ9Y3C4 175 aa12.74□□□□□ -0.37
COL9A3-208ENST00000469802 IGHV7-81A0A0B4J1V7 117 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 ITGB1BP1O14713 200 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 NBR2O15453 112 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 RGS10O43665 173 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 OR5H8P0DN80 308 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 CPEP16870 476 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 MLLT11Q13015 90 aaPredicted RBP12.73□□□□□ -0.37
COL9A3-208ENST00000469802 TRAM1Q15629 374 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 IL1F10Q8WWZ1 152 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 AGMATQ9BSE5 352 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 PARP12Q9H0J9 701 aaKnown RBP12.73□□□□□ -0.37
COL9A3-208ENST00000469802 RIMS4Q9H426 269 aaPredicted RBP12.73□□□□□ -0.37
COL9A3-208ENST00000469802 STEAP1Q9UHE8 339 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 SLC23A1Q9UHI7 598 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 HSF4Q9ULV5 492 aa12.73□□□□□ -0.37
COL9A3-208ENST00000469802 ERICH4A6NGS2 130 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 ATP6V0E1O15342 81 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 ST8SIA5O15466 376 aa12.72□□□□□ -0.37
COL9A3-208ENST00000469802 SOCS1O15524 211 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms